Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39900.1 | KRG89416 | AT4G19700.1 | 21798944 |
| AT2G39900.1 | KRH11729 | AT4G19700.1 | 21798944 |
| AT2G39900.1 | KRH36722 | AT4G19700.1 | 21798944 |
| AT2G39900.1 | KRH50476 | AT4G19700.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31081 | Soybean | cytosol | 97.47 | 96.5 |
| KRH15005 | Soybean | cytosol | 87.37 | 91.53 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 84.34 | 88.36 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 79.8 | 83.16 |
| GSMUA_Achr10P... | Banana | cytosol | 79.8 | 83.16 |
| PGSC0003DMT400069763 | Potato | cytosol | 79.29 | 83.07 |
| Solyc05g052780.2.1 | Tomato | cytosol | 79.29 | 83.07 |
| AT2G39900.1 | Thale cress | cytosol | 81.82 | 81.0 |
| CDY27267 | Canola | cytosol | 81.82 | 80.6 |
| CDX72203 | Canola | cytosol | 81.82 | 80.6 |
| CDX74822 | Canola | cytosol | 81.31 | 80.5 |
| CDY20498 | Canola | cytosol | 81.31 | 80.5 |
| Bra005003.1-P | Field mustard | cytosol | 80.81 | 80.4 |
| Bra007189.1-P | Field mustard | cytosol | 81.31 | 80.1 |
| CDY60999 | Canola | cytosol | 80.3 | 79.5 |
| EER95125 | Sorghum | cytosol | 76.26 | 76.65 |
| Os03t0266100-01 | Rice | plasma membrane | 75.76 | 76.53 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 75.25 | 75.25 |
| TraesCS4D01G213600.1 | Wheat | cytosol | 75.25 | 73.04 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 75.25 | 73.04 |
| AT3G55770.7 | Thale cress | cytosol | 82.32 | 69.96 |
| KRH33303 | Soybean | cytosol | 17.68 | 63.64 |
| CDY02959 | Canola | mitochondrion | 81.82 | 60.22 |
| CDX76073 | Canola | mitochondrion | 81.31 | 59.63 |
| KRH61425 | Soybean | cytosol | 57.58 | 58.16 |
| KRH52104 | Soybean | cytosol | 57.58 | 58.16 |
| KRG88767 | Soybean | cytosol | 57.07 | 57.65 |
| KRH35659 | Soybean | cytosol | 52.02 | 57.22 |
| KRH05574 | Soybean | cytosol | 56.57 | 57.14 |
| KRH54438 | Soybean | cytosol | 54.55 | 56.25 |
| KRH59846 | Soybean | cytosol | 62.12 | 54.91 |
| KRH65108 | Soybean | cytosol | 56.57 | 54.37 |
| KRG90348 | Soybean | cytosol | 19.7 | 54.17 |
| KRH48190 | Soybean | cytosol | 57.07 | 53.81 |
| KRH73124 | Soybean | cytosol | 45.45 | 53.57 |
| KRH40492 | Soybean | cytosol | 59.09 | 53.42 |
| KRG93772 | Soybean | cytosol | 19.7 | 53.42 |
| KRH00704 | Soybean | cytosol | 58.08 | 53.24 |
| KRH41147 | Soybean | cytosol | 61.11 | 53.07 |
| Bra014721.1-P | Field mustard | cytosol, mitochondrion | 81.31 | 51.77 |
| KRH03352 | Soybean | cytosol | 54.55 | 51.67 |
| KRH63478 | Soybean | cytosol | 52.53 | 50.98 |
| KRH57029 | Soybean | cytosol | 53.03 | 48.84 |
Protein Annotations
| EntrezGene:100809121 | MapMan:15.5.41 | Gene3D:2.10.110.10 | EMBL:ACUP02010817 | EMBL:BT098400 | UniProt:C6TL24 |
| EnsemblPlantsGene:GLYMA_18G030900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001781 | EnsemblPlants:KRG97787 |
| ProteinID:KRG97787 | ProteinID:KRG97787.1 | ProteinID:KRG97788.1 | PFAM:PF00412 | ScanProsite:PS00478 | PFscan:PS50023 |
| PANTHER:PTHR24206 | PANTHER:PTHR24206:SF28 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI0001B16EEF | InterPro:Znf_LIM |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:2371147..2374540
Molecular Weight (calculated)
21444.4 Da
IEP (calculated)
9.014
GRAVY (calculated)
-0.439
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFIGTQQKC KACEKTVYPV DQLSADGTAY HKACFRCSHC KGTLKLSNYS SMEGVLYCKP HYEQLFKESG SFSKNFQSPA KLADKTTPEL TRSPSKAASM
101: FSGTQEKCAT CGKTAYPLEK VTVEGQAYHK SCFKCSHGGC PITPSNYAAL EGILYCKHHF SQLFKEKGSY NHLTKSASVK RAAAATAAAT TAASVPES
101: FSGTQEKCAT CGKTAYPLEK VTVEGQAYHK SCFKCSHGGC PITPSNYAAL EGILYCKHHF SQLFKEKGSY NHLTKSASVK RAAAATAAAT TAASVPES
001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
Arabidopsis Description
GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.