Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74822 | Canola | cytosol | 92.0 | 92.0 |
| CDY20498 | Canola | cytosol | 92.0 | 92.0 |
| Bra005003.1-P | Field mustard | cytosol | 91.5 | 91.96 |
| CDY60999 | Canola | cytosol | 90.5 | 90.5 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 77.5 | 82.01 |
| KRG97787 | Soybean | cytosol | 81.0 | 81.82 |
| KRH31081 | Soybean | cytosol | 80.5 | 80.5 |
| Solyc05g052780.2.1 | Tomato | cytosol | 75.0 | 79.37 |
| PGSC0003DMT400069763 | Potato | cytosol | 75.0 | 79.37 |
| KRH15005 | Soybean | cytosol | 75.0 | 79.37 |
| GSMUA_Achr10P... | Banana | cytosol | 71.5 | 75.26 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 71.5 | 75.26 |
| AT3G55770.7 | Thale cress | cytosol | 86.0 | 73.82 |
| EER95125 | Sorghum | cytosol | 70.0 | 71.07 |
| Os03t0266100-01 | Rice | plasma membrane | 69.5 | 70.92 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 70.0 | 70.71 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 71.5 | 70.1 |
| TraesCS4D01G213600.1 | Wheat | cytosol | 71.0 | 69.61 |
| AT1G10200.1 | Thale cress | cytosol | 53.5 | 56.32 |
| AT1G01780.1 | Thale cress | cytosol | 55.5 | 54.15 |
| AT2G45800.1 | Thale cress | cytosol | 60.5 | 53.54 |
| AT3G61230.1 | Thale cress | cytosol | 55.0 | 51.64 |
| KRH73124 | Soybean | cytosol | 38.5 | 45.83 |
Protein Annotations
| MapMan:15.5.41 | Gene3D:2.10.110.10 | EntrezGene:818577 | UniProt:A0A178VU35 | ProteinID:AAB95275.1 | ProteinID:AEC09747.1 |
| ArrayExpress:AT2G39900 | EnsemblPlantsGene:AT2G39900 | RefSeq:AT2G39900 | TAIR:AT2G39900 | RefSeq:AT2G39900-TAIR-G | EnsemblPlants:AT2G39900.1 |
| TAIR:AT2G39900.1 | EMBL:AY094448 | EMBL:AY122901 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046872 | GO:GO:0051015 | GO:GO:0051017 |
| InterPro:IPR001781 | RefSeq:NP_181519.1 | UniProt:O04193 | ProteinID:OAP09324.1 | PFAM:PF00412 | PO:PO:0000003 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00478 | PFscan:PS50023 | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF28 |
| SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000009DE27 | InterPro:Znf_LIM | SEG:seg | : |
Description
WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
Coordinates
chr2:+:16658468..16660443
Molecular Weight (calculated)
21902.2 Da
IEP (calculated)
8.936
GRAVY (calculated)
-0.338
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.