Factsheet for PGSC0003DMT400069763

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026783
PGSC0003DMT400062617

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39900.1	PGSC0003DMT400026783	AT4G19700.1	21798944
AT2G39900.1	PGSC0003DMT400062617	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052780.2.1	Tomato	cytosol	100.0	100.0
VIT_13s0019g03280.t01	Wine grape	cytosol	87.3	87.3
GSMUA_Achr6P14980_001	Banana	cytosol	83.07	82.63
GSMUA_Achr10P...	Banana	cytosol	82.54	82.11
KRH15005	Soybean	cytosol	80.42	80.42
KRG97787	Soybean	cytosol	83.07	79.29
KRH31081	Soybean	cytosol	83.07	78.5
CDX72203	Canola	cytosol	82.01	77.11
CDY27267	Canola	cytosol	82.01	77.11
Bra007189.1-P	Field mustard	cytosol	81.48	76.62
CDY60999	Canola	cytosol	80.42	76.0
Bra005003.1-P	Field mustard	cytosol	79.89	75.88
CDX74822	Canola	cytosol	79.89	75.5
CDY20498	Canola	cytosol	79.89	75.5
AT2G39900.1	Thale cress	cytosol	79.37	75.0
Os03t0266100-01	Rice	plasma membrane	75.13	72.45
Zm00001d028550_P001	Maize	extracellular, mitochondrion	75.13	71.72
EER95125	Sorghum	cytosol	74.6	71.57
TraesCS4D01G213600.1	Wheat	cytosol	77.25	71.57
TraesCS4B01G212600.1	Wheat	cytosol	77.25	71.57
AT3G55770.7	Thale cress	cytosol	83.07	67.38
PGSC0003DMT400026590	Potato	cytosol	65.08	58.02
CDY02959	Canola	mitochondrion	81.48	57.25
CDX76073	Canola	mitochondrion	81.48	57.04
PGSC0003DMT400083108	Potato	cytosol	52.91	55.87
PGSC0003DMT400014797	Potato	cytosol	48.68	54.76
PGSC0003DMT400030205	Potato	cytosol	53.97	54.55
PGSC0003DMT400000453	Potato	cytosol	63.49	54.3
PGSC0003DMT400055738	Potato	cytosol	64.02	53.3
PGSC0003DMT400062907	Potato	cytosol	52.91	52.91
PGSC0003DMT400059073	Potato	cytosol	52.38	51.3
PGSC0003DMT400027522	Potato	cytosol	52.38	51.3
Bra014721.1-P	Field mustard	cytosol, mitochondrion	82.01	49.84
KRH73124	Soybean	cytosol	42.33	47.62
PGSC0003DMT400007915	Potato	cytosol	51.32	43.5

Protein Annotations

EnsemblPlants:PGSC0003DMT400069763	EnsemblPlantsGene:PGSC0003DMG400027131	EntrezGene:102588712	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	PFAM:PF00412
PFscan:PS50023	PGSC:PGSC0003DMG400027131	RefSeq:XP_006355670.1	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI0002765F16	UniProt:M1CL39	MapMan:15.5.41	:	:	:

Description

LIM domain protein WLIM2 [Source:PGSC_GENE;Acc:PGSC0003DMG400027131]

Coordinates

chr5:+:48063382..48068169

Molecular Weight (calculated)

20822.9 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.497

Length

189 amino acids

Sequence
(BLAST)

001: MSFTGTQQKC KACEKTVYPV ELLSADGISY HKSCFKCTHC KGTLKLSSYS SMEGVLYCKP HFEQLYKESG NFNKNFQSPV KSAEKLTPML TKSPSKAAGM
101: FSGTQEKCAT CGKTAYPLEK VTVENQSYHK SCFKCSHGGC SLNPSNYAAL DGILYCKPHF SQLFKEKGSY NHLIKSASMK RPAATVPDS

Best Arabidopsis Sequence Match ( AT3G55770.3 )
(BLAST)

001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.