CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72203	Canola	cytosol	73.23	98.01
CDY27267	Canola	cytosol	72.86	97.51
CDX76073	Canola	mitochondrion	95.17	94.81
CDX74822	Canola	cytosol	65.8	88.5
CDY20498	Canola	cytosol	65.8	88.5
CDY60999	Canola	cytosol	64.68	87.0
VIT_13s0019g03280.t01	Wine grape	cytosol	59.48	84.66
KRG97787	Soybean	cytosol	60.22	81.82
Solyc05g052780.2.1	Tomato	cytosol	57.25	81.48
PGSC0003DMT400069763	Potato	cytosol	57.25	81.48
KRH15005	Soybean	cytosol	56.51	80.42
KRH31081	Soybean	cytosol	59.11	79.5
GSMUA_Achr10P...	Banana	cytosol	56.13	79.47
GSMUA_Achr6P14980_001	Banana	cytosol	56.13	79.47
AT3G55770.7	Thale cress	cytosol	68.77	79.4
Os03t0266100-01	Rice	plasma membrane	53.53	73.47
EER95125	Sorghum	cytosol	52.79	72.08
Zm00001d028550_P001	Maize	extracellular, mitochondrion	52.79	71.72
TraesCS4B01G212600.1	Wheat	cytosol	52.79	69.61
TraesCS4D01G213600.1	Wheat	cytosol	52.42	69.12
CDY45697	Canola	cytosol	38.29	56.91
CDX86962	Canola	cytosol	28.62	56.2
CDX89105	Canola	cytosol	43.12	54.98
CDY20647	Canola	cytosol	38.29	54.5
CDY31040	Canola	cytosol	37.92	53.97
CDY56926	Canola	cytosol	42.38	53.77
CDY38028	Canola	cytosol	40.89	53.66
CDX94916	Canola	cytosol	37.55	53.44
CDX71757	Canola	cytosol	42.75	53.24
CDY48936	Canola	cytosol	43.12	53.21
CDY01571	Canola	cytosol	40.52	53.17
CDX93448	Canola	cytosol	37.55	53.16
CDY15152	Canola	cytosol	40.15	52.68
CDX90059	Canola	cytosol	40.15	52.68
CDY27358	Canola	cytosol	44.24	51.74
CDY37066	Canola	cytosol	43.87	51.53
CDY18899	Canola	cytosol	43.12	51.1
CDX74767	Canola	cytosol	43.12	50.66
KRH73124	Soybean	cytosol	30.48	48.81
CDX95666	Canola	cytosol	40.52	47.81
CDY68273	Canola	cytosol	40.15	47.79
CDX83389	Canola	cytosol	40.15	47.79

Protein Annotations

EnsemblPlants:CDY02959	EnsemblPlantsGene:GSBRNA2T00115247001	Gene3D:2.10.110.10	GO:A0A078EQM2	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	PFAM:PF00412	PFscan:PS50023	ProteinID:CDY02959	ProteinID:CDY02959.1
ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0004EDB3EE	MapMan:15.5.41

Description

BnaC04g25270D

Coordinates

chrLK031938:+:1099387..1101995

Molecular Weight (calculated)

29996.9 Da

IEP (calculated)

9.854

GRAVY (calculated)

-0.503

Length

269 amino acids

Sequence
(BLAST)

001: MDIVGMRRRL DSRRGIHFTS IRRKLPFSYF SEANIFVRSW TLSAQREVID PSIPVEEKKG QRQKGVEGRM SSFTGTQQKC KACEKTVYPV ELLSADGVSY
101: HKSCFKCSHC KSRLQLSRYS SMEGVLYCKP HYEQLFKESG SFTKNFQSPA KPAEKSNPEL TRTPSRVAGM FSGTQEKCAT CSKTVYPIEK VTVESQTYHK
201: SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG TPATAVPES

Best Arabidopsis Sequence Match ( AT3G55770.3 )
(BLAST)

001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.