CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014447.1-P	Field mustard	cytosol	100.0	100.0
CDY56926	Canola	cytosol	94.31	93.87
CDY48936	Canola	cytosol	90.52	87.61
CDX71757	Canola	cytosol	89.1	87.04
CDY45697	Canola	cytosol	73.93	86.19
AT3G61230.1	Thale cress	cytosol	85.31	84.51
CDY18899	Canola	cytosol	77.25	71.81
CDX74767	Canola	cytosol	77.25	71.18
CDY27358	Canola	cytosol	77.25	70.87
CDY37066	Canola	cytosol	76.78	70.74
CDX90059	Canola	cytosol	67.77	69.76
CDY15152	Canola	cytosol	67.77	69.76
CDX86962	Canola	cytosol	45.02	69.34
CDY38028	Canola	cytosol	66.35	68.29
CDY01571	Canola	cytosol	65.88	67.8
VIT_15s0046g03370.t01	Wine grape	cytosol	70.14	67.27
CDX83389	Canola	cytosol	72.04	67.26
CDY68273	Canola	cytosol	72.04	67.26
KRH65108	Soybean	cytosol	65.4	66.99
CDX95666	Canola	cytosol	72.04	66.67
KRH48190	Soybean	cytosol	65.88	66.19
PGSC0003DMT400026590	Potato	cytosol	66.35	66.04
Solyc10g017520.2.1	Tomato	cytosol	65.88	65.57
KRH00704	Soybean	cytosol	65.88	64.35
KRH40492	Soybean	cytosol	65.4	63.01
PGSC0003DMT400000453	Potato	cytosol	65.88	62.9
Solyc01g094320.2.1	Tomato	cytosol	66.35	62.78
CDY20498	Canola	cytosol	56.4	59.5
CDX74822	Canola	cytosol	56.4	59.5
Solyc05g049870.2.1	Tomato	cytosol	63.51	58.77
PGSC0003DMT400055738	Potato	cytosol	63.03	58.59
CDY60999	Canola	cytosol	54.98	58.0
CDX72203	Canola	cytosol	54.03	56.72
CDY27267	Canola	cytosol	54.03	56.72
CDY20647	Canola	cytosol	43.13	48.15
CDY31040	Canola	cytosol	42.65	47.62
CDX94916	Canola	cytosol	42.18	47.09
CDX93448	Canola	cytosol	42.18	46.84
CDY02959	Canola	mitochondrion	54.98	43.12
CDX76073	Canola	mitochondrion	54.03	42.22

Protein Annotations

EnsemblPlants:CDX89105	EnsemblPlantsGene:GSBRNA2T00149241001	Gene3D:2.10.110.10	GO:A0A078DIT9	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412	PFscan:PS50023	ProteinID:CDX89105	ProteinID:CDX89105.1
ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002543A12	MapMan:15.5.41	:

Description

BnaA04g00810D

Coordinates

chrLK031857:-:1081389..1082276

Molecular Weight (calculated)

23621.7 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.599

Length

211 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVM DLMTLEGMPY HKSCFRCSHC NGTLVISNYS SMDGVLYCKP HFEQLFKESG NFSKNFQSAG KTEKSNDVTR APSKLSSFFS
101: GTQDKCAACK KTVYPLEKMA MEGESYHKTC FRCAHGGCPL THSSYAALNG ILYCKVHFSQ LFLEKGNYNH VLEAANHRRT SEEDKIEPNV NDASPKEEEE
201: TSDAVPEEHE S

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.