Factsheet for Solyc01g094320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000453	Potato	cytosol	95.96	96.83
Solyc10g017520.2.1	Tomato	cytosol	74.44	78.3
Solyc05g049870.2.1	Tomato	cytosol	75.78	74.12
CDX86962	Canola	cytosol	42.15	68.61
KRH65108	Soybean	cytosol	63.23	68.45
VIT_15s0046g03370.t01	Wine grape	cytosol	66.82	67.73
AT1G01780.1	Thale cress	cytosol	61.44	66.83
CDY38028	Canola	cytosol	61.44	66.83
Bra032650.1-P	Field mustard	cytosol	61.44	66.83
CDY56926	Canola	cytosol	63.23	66.51
CDX89105	Canola	cytosol	62.78	66.35
Bra014447.1-P	Field mustard	cytosol	62.78	66.35
CDX90059	Canola	cytosol	60.99	66.34
Bra033233.1-P	Field mustard	cytosol	60.99	66.34
CDY01571	Canola	cytosol	60.99	66.34
CDY15152	Canola	cytosol	60.99	66.34
CDY45697	Canola	cytosol	53.36	65.75
KRH48190	Soybean	cytosol	61.88	65.71
CDX71757	Canola	cytosol	62.78	64.81
Bra007586.1-P	Field mustard	cytosol	62.78	64.52
CDY48936	Canola	cytosol	62.78	64.22
Solyc05g052780.2.1	Tomato	cytosol	53.81	63.49
AT3G61230.1	Thale cress	cytosol	60.54	63.38
CDY18899	Canola	cytosol	63.68	62.56
Bra004939.1-P	Field mustard	cytosol	64.13	62.45
CDX74767	Canola	cytosol	64.13	62.45
CDY27358	Canola	cytosol	64.13	62.17
Bra039313.1-P	Field mustard	cytosol	63.68	62.01
AT2G45800.1	Thale cress	cytosol	62.78	61.95
CDY37066	Canola	cytosol	63.23	61.57
KRH00704	Soybean	cytosol	59.19	61.11
KRH40492	Soybean	cytosol	58.74	59.82
CDY68273	Canola	cytosol	60.54	59.73
CDX83389	Canola	cytosol	60.54	59.73
Bra000404.1-P	Field mustard	cytosol	60.09	59.29
CDX95666	Canola	cytosol	60.54	59.21
Solyc08g080740.2.1	Tomato	cytosol	48.43	55.67
Solyc08g007940.2.1	Tomato	cytosol	51.12	55.34
Solyc06g071310.2.1	Tomato	cytosol	41.26	51.4
Solyc03g114000.2.1	Tomato	cytosol	42.15	49.74
Solyc11g044740.1.1	Tomato	cytosol	41.26	47.67
Solyc12g088320.1.1	Tomato	cytosol	39.46	47.06
Solyc04g077780.2.1	Tomato	cytosol	39.01	45.08

Protein Annotations

EMBL:KF387649	EnsemblPlants:Solyc01g094320.2.1	EnsemblPlantsGene:Solyc01g094320.2	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI00027687B8
UniProt:K4AZH3	MapMan:15.5.41	:	:	:	:

Description

PLIM2a [Source:UniProtKB/TrEMBL;Acc:K4AZH3]

Coordinates

chr1:-:85840187..85842910

Molecular Weight (calculated)

24637.4 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.685

Length

223 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC SACDKTVYFV DLLSADGVTY HKSCFKCSHC KGTLVMSNYS SMDGILYCKT HFEQLFKESG NFSKNFQNSA KSERQNSLTR APSKLSALFS
101: GTQDKCAACD KTVYPLEKVT MEGESFHKSC FKCAHGGCAL THATYASLDG NLYCKHHFAQ LFMEKGNYQH VLKAANNKKN SAAVTPLNDD ENNAVENSST
201: EENSNDDNNT NKEPENAEES QES

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.