Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059073 | Potato | cytosol | 95.85 | 95.85 |
| GSMUA_Achr1P22510_001 | Banana | cytosol | 77.2 | 79.68 |
| VIT_03s0091g01010.t01 | Wine grape | cytosol | 77.2 | 76.8 |
| GSMUA_Achr8P31070_001 | Banana | cytosol | 76.68 | 76.68 |
| Solyc12g088320.1.1 | Tomato | cytosol | 74.09 | 76.47 |
| GSMUA_Achr2P06650_001 | Banana | cytosol | 75.65 | 74.87 |
| EES16055 | Sorghum | cytosol | 75.13 | 74.74 |
| Solyc04g077780.2.1 | Tomato | cytosol | 74.09 | 74.09 |
| Zm00001d041725_P001 | Maize | cytosol | 75.13 | 73.98 |
| Zm00001d035304_P001 | Maize | mitochondrion | 74.61 | 73.85 |
| TraesCS5B01G107400.1 | Wheat | cytosol | 74.61 | 73.47 |
| KRH35659 | Soybean | cytosol | 68.39 | 73.33 |
| TraesCS5D01G115000.1 | Wheat | cytosol | 74.09 | 72.96 |
| HORVU5Hr1G028180.1 | Barley | cytosol | 74.09 | 72.96 |
| Solyc06g071310.2.1 | Tomato | cytosol | 66.84 | 72.07 |
| Os12t0510900-01 | Rice | cytosol | 37.31 | 71.29 |
| Solyc03g114000.2.1 | Tomato | cytosol | 64.25 | 65.61 |
| TraesCS5A01G103100.2 | Wheat | cytosol | 74.61 | 61.28 |
| Solyc05g052780.2.1 | Tomato | cytosol | 51.3 | 52.38 |
| Solyc10g017520.2.1 | Tomato | cytosol | 48.19 | 43.87 |
| Solyc08g080740.2.1 | Tomato | cytosol | 44.04 | 43.81 |
| Solyc08g007940.2.1 | Tomato | cytosol | 46.63 | 43.69 |
| Solyc01g094320.2.1 | Tomato | cytosol | 47.67 | 41.26 |
| Solyc05g049870.2.1 | Tomato | cytosol | 48.19 | 40.79 |
Protein Annotations
| EnsemblPlants:Solyc11g044740.1.1 | EnsemblPlantsGene:Solyc11g044740.1 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | PFAM:PF00412 | PFscan:PS50023 |
| ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000276A464 | UniProt:K4D8D9 | MapMan:15.5.41 |
Description
No Description!
Coordinates
chr11:-:32363166..32364317
Molecular Weight (calculated)
21690.8 Da
IEP (calculated)
8.369
GRAVY (calculated)
-0.479
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFAGTTQKC NACDKTVYLV DRLAADNRVY HKACFRCYHC KSTLKLSNFN SFDGVIYCRP HFDQLFKRTG SLDKSFEGTP KITKPEKTVD NENGTSNKVS
101: SLFAGTREKC VCCTKTVYPI EKVTVNGAAY HKACFKCSHG GCTISPSNYI AHEGTLYCKH HHIQLFKEKG NYSQLEIDHE IEPALPPQIA MES
101: SLFAGTREKC VCCTKTVYPI EKVTVNGAAY HKACFKCSHG GCTISPSNYI AHEGTLYCKH HHIQLFKEKG NYSQLEIDHE IEPALPPQIA MES
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.