CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035304_P001	Maize	mitochondrion	97.94	97.44
Zm00001d041725_P001	Maize	cytosol	96.91	95.92
TraesCS5D01G115000.1	Wheat	cytosol	94.85	93.88
HORVU5Hr1G028180.1	Barley	cytosol	94.85	93.88
TraesCS5B01G107400.1	Wheat	cytosol	94.33	93.37
Os12t0510900-01	Rice	cytosol	48.45	93.07
GSMUA_Achr1P22510_001	Banana	cytosol	82.47	85.56
GSMUA_Achr8P31070_001	Banana	cytosol	82.99	83.42
GSMUA_Achr2P06650_001	Banana	cytosol	82.99	82.56
TraesCS5A01G103100.2	Wheat	cytosol	94.33	77.87
PGSC0003DMT400059073	Potato	cytosol	75.77	76.17
VIT_03s0091g01010.t01	Wine grape	cytosol	75.77	75.77
Solyc11g044740.1.1	Tomato	cytosol	74.74	75.13
KRH35659	Soybean	cytosol	69.59	75.0
EER95125	Sorghum	cytosol	51.03	50.25
EES12556	Sorghum	cytosol	50.0	47.78
EES05836	Sorghum	cytosol	46.91	45.5
EER89500	Sorghum	cytosol	57.73	7.59

Protein Annotations

MapMan:15.5.41	Gene3D:2.10.110.10	EntrezGene:8067203	UniProt:C5YP52	EnsemblPlants:EES16055	ProteinID:EES16055
ProteinID:EES16055.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0046872	GO:GO:0051015	GO:GO:0051017	InterPro:IPR001781
PFAM:PF00412	ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	SMART:SM00132
EnsemblPlantsGene:SORBI_3008G110200	SUPFAM:SSF57716	unigene:Sbi.20233	UniParc:UPI0001A883AC	RefSeq:XP_002442217.1	InterPro:Znf_LIM

Description

hypothetical protein

Coordinates

chr8:+:51315201..51317365

Molecular Weight (calculated)

21890.9 Da

IEP (calculated)

8.370

GRAVY (calculated)

-0.629

Length

194 amino acids

Sequence
(BLAST)

001: MATSFQGTTT KCTACDKTVY LVDKLTADNR IYHKACFRCH HCKGTLKLAN YNSFEGVLYC RPHFDQLFKR TGSLDKSFEG TPKVVKPERN VGNENAVKVS
101: SAFAGTREKC VGCSKTVYPI ERVTVNNTMY HKSCFKCCHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NFSQLENDHE KTSQAGSLED EEEY

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.