Factsheet for Zm00001d035304_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16055	Sorghum	cytosol	97.44	97.94
Zm00001d041725_P001	Maize	cytosol	95.38	94.9
TraesCS5D01G115000.1	Wheat	cytosol	93.33	92.86
HORVU5Hr1G028180.1	Barley	cytosol	92.82	92.35
TraesCS5B01G107400.1	Wheat	cytosol	92.82	92.35
Os12t0510900-01	Rice	cytosol	46.67	90.1
GSMUA_Achr1P22510_001	Banana	cytosol	81.54	85.03
GSMUA_Achr8P31070_001	Banana	cytosol	82.05	82.9
GSMUA_Achr2P06650_001	Banana	cytosol	82.05	82.05
TraesCS5A01G103100.2	Wheat	cytosol	92.31	76.6
KRH35659	Soybean	cytosol	70.26	76.11
VIT_03s0091g01010.t01	Wine grape	cytosol	75.38	75.77
PGSC0003DMT400059073	Potato	cytosol	74.87	75.65
Solyc11g044740.1.1	Tomato	cytosol	73.85	74.61
Zm00001d028550_P001	Maize	extracellular, mitochondrion	50.26	49.49
Zm00001d002844_P003	Maize	cytosol	48.72	46.12
Zm00001d025926_P001	Maize	cytosol	47.69	45.37
Zm00001d051262_P001	Maize	cytosol	47.18	44.44
Zm00001d017382_P001	Maize	cytosol	47.18	37.25
Zm00001d037252_P002	Maize	cytosol	56.92	7.64

Protein Annotations

MapMan:15.5.41	Gene3D:2.10.110.10	EntrezGene:541782	ProteinID:AQK78658.1	UniProt:B6T925	EMBL:BT055434
EMBL:EU961490	EMBL:EU970100	EMBL:EU974672	EMBL:EU975462	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	EMBL:KJ728400	PFAM:PF00412	ScanProsite:PS00478	PFscan:PS50023
PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000182CD73	EnsemblPlantsGene:Zm00001d035304
EnsemblPlants:Zm00001d035304_P001	EnsemblPlants:Zm00001d035304_T001	InterPro:Znf_LIM	:	:	:

Description

LIM-transcription factor 10LIM domain-containing protein WLIM1

Coordinates

chr6:-:20284434..20286443

Molecular Weight (calculated)

22009.0 Da

IEP (calculated)

8.370

GRAVY (calculated)

-0.695

Length

195 amino acids

Sequence
(BLAST)

001: MATSFQGTTT KCTACDKTVY LVDKLTADNR IYHKACFRCH HCKGTLKLAN YNSFEGVLYC RPHFDQLFKR TGSLDKSFEG TPKVVKPERN VGNENATKVS
101: SAFAGTREKC VGCSKTVYPT ERVTVNNTMY HKSCFKCCHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NFSQLENDHE KTSQAGSLEE DEQEY

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.