Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16055 | Sorghum | cytosol | 93.07 | 48.45 |
| HORVU5Hr1G028180.1 | Barley | cytosol | 92.08 | 47.45 |
| Zm00001d041725_P001 | Maize | cytosol | 91.09 | 46.94 |
| TraesCS5D01G115000.1 | Wheat | cytosol | 91.09 | 46.94 |
| TraesCS5B01G107400.1 | Wheat | cytosol | 91.09 | 46.94 |
| Zm00001d035304_P001 | Maize | mitochondrion | 90.1 | 46.67 |
| GSMUA_Achr1P22510_001 | Banana | cytosol | 76.24 | 41.18 |
| GSMUA_Achr2P06650_001 | Banana | cytosol | 78.22 | 40.51 |
| GSMUA_Achr8P31070_001 | Banana | cytosol | 76.24 | 39.9 |
| TraesCS5A01G103100.2 | Wheat | cytosol | 92.08 | 39.57 |
| PGSC0003DMT400059073 | Potato | cytosol | 71.29 | 37.31 |
| Solyc11g044740.1.1 | Tomato | cytosol | 71.29 | 37.31 |
| VIT_03s0091g01010.t01 | Wine grape | cytosol | 70.3 | 36.6 |
| KRH35659 | Soybean | cytosol | 62.38 | 35.0 |
| Os02t0641000-00 | Rice | mitochondrion | 46.53 | 30.52 |
| Os03t0266100-01 | Rice | plasma membrane | 51.49 | 26.53 |
| Os04t0532500-01 | Rice | plasma membrane | 45.54 | 22.89 |
| Os06t0237300-01 | Rice | plasma membrane | 56.44 | 4.37 |
| Os06t0237200-00 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os12t0510900-01 | EnsemblPlantsGene:Os12g0510900 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | PFAM:PF00412 | PFscan:PS50023 |
| ProteinID:BAF29883.1 | ProteinID:BAT17326.1 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI0000DD9ED8 | UniProt:Q0IN32 |
| MapMan:15.5.41 | : | : | : | : | : |
Description
Similar to LIM domain protein WLIM-1. (Os12t0510900-01)
Coordinates
chr12:+:19681340..19682064
Molecular Weight (calculated)
11312.2 Da
IEP (calculated)
7.470
GRAVY (calculated)
-0.703
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: NAIKVSSAFA GTREKCVGCN KTVYPIERVT VNNTMYHKSC FKCCHGGCTI SPSNYIAHEG KLYCKHHHIQ LIKEKGNFSQ LENDHEKASQ SGSVEDEDSE
101: Y
101: Y
001: MSQLSNYNSF EGVLYCRPHF DQNFKRTGSL EKSFEGTPKI GKPDRPLEGE RPAGTKVSNM FGGTREKCVG CDKTVYPIEK VSVNGTLYHK SCFKCTHGGC
101: TISPSNYIAH EGKLYCKHHH IQLIKEKGNL SQLEGGGENA AKDKVVAA
101: TISPSNYIAH EGKLYCKHHH IQLIKEKGNL SQLEGGGENA AKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.