Factsheet for Os06t0237200-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0237300-01	Rice	plasma membrane	1.3	0.54
Os02t0641000-00	Rice	mitochondrion	0.0	0.0
Os03t0266100-01	Rice	plasma membrane	0.0	0.0
Os04t0532500-01	Rice	plasma membrane	0.0	0.0
Os12t0510900-01	Rice	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.110	Gene3D:1.10.150.20	MapMan:14.2.4	Gene3D:3.30.210.10
Gene3D:3.30.460.10	Gene3D:3.40.50.10190	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	InterPro:DNA-dir_DNA_pol_X	InterPro:DNA_Pol_thumb_sf
InterPro:DNA_pol-X_BS	InterPro:DNA_pol_B_palm_palm	InterPro:DNA_pol_X	InterPro:DNA_pol_X_beta-like	InterPro:DNA_pol_b-like_N	InterPro:DNA_pol_lambd_fingers_domain
InterPro:DNA_pol_lamdba_lyase_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006281	GO:GO:0006289	GO:GO:0006302
GO:GO:0006303	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740	GO:GO:0016779	GO:GO:0016829
GO:GO:0030145	GO:GO:0034061	GO:GO:0046872	GO:GO:0051575	GO:GO:0071897	GO:GO:0097510
InterPro:IPR001357	InterPro:IPR027421	InterPro:IPR036420	InterPro:IPR037160	EnsemblPlantsGene:Os06g0237200	EnsemblPlants:Os06t0237200-00
PFAM:PF10391	PFAM:PF14716	PFAM:PF14791	PFAM:PF14792	PRINTS:PR00869	PRINTS:PR00870
ScanProsite:PS00522	PFscan:PS50172	PANTHER:PTHR11276	PANTHER:PTHR11276:SF1	InterPro:PolB_thumb	SMART:SM00483
SUPFAM:SSF47802	SUPFAM:SSF52113	SUPFAM:SSF81301	SUPFAM:SSF81585	UniParc:UPI0000E1272E	:

Description

DNA polymerase lambdaSimilar to DNA polymerase lambda. (Os06t0237200-00)

Coordinates

chr6:-:7128403..7133470

Molecular Weight (calculated)

59497.5 Da

IEP (calculated)

7.226

GRAVY (calculated)

-0.470

Length

539 amino acids

Sequence
(BLAST)

001: AAAAKLDPDG MFRGVSAFVV PHAVQSRRLE VWKQRLAQMG GRVQEKLAAK GGGGAVTHVL AADAKALLRE LDAAWLHRFR GSVVSFEWLE ECLKSGERLP
101: EHKFAINYEE EFKPKKEGGA AGSGVLQSAK RSKISSDGPE NRKETAGGNR ESRDAIAHPN EDSDVVKGPS TCTSSQSASG DSKETIASQN AFKAEEASSG
201: ESSTYAPPDL NRNITEIFGK LINIYRALGD DRRSFSYYKA IPVIEKLPFK IESADQVKDL PAIGKSLKDH INEIVNTGKL SKLEHFENDE KVRTVSLFGE
301: VWGVGPATAL KLYDKGHRTL DDLQKDDSLT SAQRIGLKFF DDIKQRIPRH EVSEMEKLLQ EVGTDILPGV IIVCGGSYRR GKSSCGDMDI IITHPDGESH
401: VGFLPKFVQR LKGINFLRED LIFSIHSIEG TDCGVDTYFG LCTYPGRELR HRIDLKVYPR NRHAFGLLAW TGNDVLNRRL RILADSKGYI LDDTGLYLAT
501: PGSGGKRGGR SDAIINCDTE KDVFDTLGFP WLEPHERNL

Best Arabidopsis Sequence Match ( AT1G10520.1 )
(BLAST)

001: MAAKRGRNRS PSPDPEGMFA GMVVFMVEIG VQRRRLQIWK QKLVQMGAVI EEDRVTKKVT HVLAMNLEAL LHKFGKERLS HFTARLMLYQ WLEDSLTSGE
101: KANEDLYVLK IDSEEVDKPK KSLPAISGSE DQSSPQKRTR YSPDAGDFKG VESHSNTQGS PDSPTSCSVP STSASPGEGI AETPTSPQSE STSVYKPPDL
201: NRNITEIFGK LINIYRALGE DRRSFSYYKA IPVIEKFPTR IESVDQLKHL PGIGKAMRDH IQEIVTTGKL SKLEHFETDE KVRTISLFGE VWGVGPATAL
301: KLYEKGHRTL EDLKNEDSLT HAQKLGLKYF DDIKTRIPRQ EVQEMEQLLQ RVGEETLPGV NIVCGGSYRR GKATCGDLDI VVTHPDGQSH KGFLTKFVKR
401: LKEMNFLRED LIFSTHSEEG TDSGVDTYFG LCTYPGQELR RRIDFKVYPR DIYSFGLIAW TGNDVLNRRL RLLAESKGYR LDDTGLFPAT HSSSGNRGAR
501: GTASLKLSTE KQVFDFLGFP WLEPHERNL

Arabidopsis Description

POLLDNA polymerase lambda [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.