Factsheet for Zm00001d002844_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12556	Sorghum	cytosol	91.26	92.61
Zm00001d025926_P001	Maize	cytosol	91.26	91.71
Os04t0532500-01	Rice	plasma membrane	86.89	89.05
TraesCS2A01G370800.1	Wheat	cytosol	85.44	86.7
TraesCS2D01G367100.1	Wheat	cytosol	85.92	86.34
TraesCS2B01G388000.1	Wheat	cytosol	85.44	85.44
GSMUA_Achr1P03020_001	Banana	cytosol	64.56	74.72
Zm00001d051262_P001	Maize	cytosol	73.79	73.43
GSMUA_Achr4P29420_001	Banana	cytosol	70.39	72.14
GSMUA_Achr2P18580_001	Banana	cytosol	62.14	68.82
GSMUA_Achr11P...	Banana	cytosol	66.02	68.0
GSMUA_Achr2P11440_001	Banana	cytosol	66.02	68.0
GSMUA_Achr5P20680_001	Banana	cytosol	65.53	67.16
Zm00001d017382_P001	Maize	cytosol	76.7	63.97
Zm00001d028550_P001	Maize	extracellular, mitochondrion	56.8	59.09
VIT_02s0025g03980.t01	Wine grape	cytosol	61.65	59.07
PGSC0003DMT400014797	Potato	cytosol	45.63	55.95
Solyc08g007940.2.1	Tomato	cytosol	54.37	54.37
KRH59846	Soybean	cytosol	57.77	53.12
Solyc08g080740.2.1	Tomato	cytosol	49.51	52.58
KRH41147	Soybean	cytosol	56.8	51.32
Zm00001d041725_P001	Maize	cytosol	47.09	49.49
Zm00001d035304_P001	Maize	mitochondrion	46.12	48.72
HORVU5Hr1G031550.3	Barley	cytosol	21.36	44.44
PGSC0003DMT400007915	Potato	cytosol	46.12	42.6
Zm00001d037252_P002	Maize	cytosol	44.66	6.33

Protein Annotations

EnsemblPlants:Zm00001d002844_P003	EnsemblPlants:Zm00001d002844_T003	EnsemblPlantsGene:Zm00001d002844	EntrezGene:100194335	Gene3D:2.10.110.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF30
PFAM:PF00412	PFscan:PS50023	ProteinID:ONM15494.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0008424BFF	UniProt:A0A1D6E4S2	MapMan:15.5.41	:	:

Description

LIM-transcription factor 6LIM domain-containing protein PLIM2b

Coordinates

chr2:+:24434076..24435516

Molecular Weight (calculated)

22680.7 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.513

Length

206 amino acids

Sequence
(BLAST)

001: MSFTGTQDKC TACDKTVHFI DLLTADGAIY HKTCFKCSHC KGVLSMCSYS SMDGVLYCKT HFEQLFKETG SFSKNFTPGG KSSDKGELVQ TRAPSKLSSA
101: FSGTQDKCAA CQKTVYPLEK LTLEGESYHK SCFKCSHGGC ILTTSSYAAL NGVLYCKIHF AQLFMEKGSY NHMNKKSPSQ EVLPDVADEE QPPEPAPPQD
201: EKEEDN

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.