Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 87.1 | 81.0 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 86.56 | 80.1 |
| GSMUA_Achr1P03020_001 | Banana | cytosol | 76.34 | 79.78 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 79.03 | 73.13 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 75.27 | 70.0 |
| EES05836 | Sorghum | cytosol | 69.89 | 65.0 |
| TraesCS2A01G370800.1 | Wheat | cytosol | 69.89 | 64.04 |
| TraesCS2D01G367100.1 | Wheat | cytosol | 69.89 | 63.41 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 70.43 | 63.28 |
| EES12556 | Sorghum | cytosol | 68.82 | 63.05 |
| Os04t0532500-01 | Rice | plasma membrane | 67.74 | 62.69 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 69.35 | 62.62 |
| Zm00001d051262_P001 | Maize | cytosol | 69.35 | 62.32 |
| Zm00001d002844_P003 | Maize | cytosol | 68.82 | 62.14 |
| Zm00001d025926_P001 | Maize | cytosol | 68.28 | 61.95 |
| TraesCS6A01G236600.1 | Wheat | cytosol | 70.43 | 61.79 |
| GSMUA_Achr10P... | Banana | cytosol | 62.9 | 61.58 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 62.9 | 61.58 |
| TraesCS6D01G219200.1 | Wheat | cytosol | 70.43 | 61.5 |
| TraesCS1A01G173600.1 | Wheat | cytosol | 66.13 | 61.5 |
| TraesCS1D01G165200.1 | Wheat | cytosol | 65.59 | 58.94 |
| TraesCS1B01G190800.1 | Wheat | cytosol | 65.59 | 58.65 |
| VIT_02s0025g03980.t01 | Wine grape | cytosol | 67.2 | 58.14 |
| KRH59846 | Soybean | cytosol | 62.9 | 52.23 |
| Solyc08g080740.2.1 | Tomato | cytosol | 54.3 | 52.06 |
| Zm00001d017382_P001 | Maize | cytosol | 68.28 | 51.42 |
| Solyc08g007940.2.1 | Tomato | cytosol | 56.45 | 50.97 |
| PGSC0003DMT400014797 | Potato | cytosol | 45.7 | 50.6 |
| GSMUA_Achr1P22510_001 | Banana | cytosol | 50.54 | 50.27 |
| GSMUA_Achr8P31070_001 | Banana | cytosol | 51.61 | 49.74 |
| KRH41147 | Soybean | cytosol | 60.75 | 49.56 |
| Os02t0641000-00 | Rice | mitochondrion | 39.78 | 48.05 |
| GSMUA_Achr2P06650_001 | Banana | cytosol | 48.39 | 46.15 |
| GSMUA_Achr8P25860_001 | Banana | cytosol | 49.46 | 45.54 |
| GSMUA_Achr9P18250_001 | Banana | cytosol | 49.46 | 44.66 |
| PGSC0003DMT400007915 | Potato | cytosol | 47.85 | 39.91 |
| HORVU6Hr1G060580.5 | Barley | plastid | 43.01 | 38.84 |
| HORVU5Hr1G031550.3 | Barley | cytosol | 17.2 | 32.32 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P18580_001 | EnsemblPlants:GSMUA_Achr2T18580_001 | EnsemblPlantsGene:GSMUA_Achr2G18580_001 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF22 | PFAM:PF00412 |
| PFscan:PS50023 | ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI0002964E9B | UniProt:M0S949 |
| MapMan:15.5.41 | : | : | : | : | : |
Description
Putative Pollen-specific protein SF3 [Source:GMGC_GENE;Acc:GSMUA_Achr2G18580_001]
Coordinates
chr2:-:18951169..18952284
Molecular Weight (calculated)
20576.8 Da
IEP (calculated)
8.433
GRAVY (calculated)
-0.249
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSGTLDKC KACEKTVHFI DLLSADGVIY HKSCFRCSHC NGTLSMCNYS SMEGVLYCKP HFEQLFKETG TFTKKFPTGI KAGERNELSK TPSKFSSMFS
101: GTQDKCASCK KTAYPLETLT MEGESYHKTC FKCSVGGCTL TPSSCAALNG ILYCKHHFAR LFMEKGSYSH VIQAALMKQN AAEQPI
101: GTQDKCASCK KTAYPLETLT MEGESYHKTC FKCSVGGCTL TPSSCAALNG ILYCKHHFAR LFMEKGSYSH VIQAALMKQN AAEQPI
001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES
Arabidopsis Description
PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.