Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 3
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P25860_001 | Banana | cytosol | 87.86 | 89.6 |
| GSMUA_Achr8P31070_001 | Banana | cytosol | 56.8 | 60.62 |
| GSMUA_Achr1P22510_001 | Banana | cytosol | 54.85 | 60.43 |
| GSMUA_Achr2P06650_001 | Banana | cytosol | 54.37 | 57.44 |
| GSMUA_Achr1P03020_001 | Banana | cytosol | 43.69 | 50.56 |
| GSMUA_Achr10P... | Banana | cytosol | 46.12 | 50.0 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 46.12 | 50.0 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 44.66 | 49.46 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 44.66 | 45.77 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 44.17 | 45.5 |
| GSMUA_Achr11P... | Banana | cytosol | 43.2 | 44.5 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 42.23 | 43.28 |
| TraesCS7B01G098800.3 | Wheat | cytosol | 63.11 | 10.36 |
| TraesCS7A01G193500.2 | Wheat | cytosol | 62.62 | 10.17 |
| TraesCS7D01G194800.1 | Wheat | cytosol | 62.62 | 10.09 |
| Zm00001d037252_P002 | Maize | cytosol | 60.68 | 8.6 |
| EER89500 | Sorghum | cytosol | 61.16 | 8.54 |
| HORVU7Hr1G039480.4 | Barley | cytosol, endoplasmic reticulum | 51.46 | 8.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P18250_001 | EnsemblPlants:GSMUA_Achr9T18250_001 | EnsemblPlantsGene:GSMUA_Achr9G18250_001 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | PFAM:PF00412 |
| PFscan:PS50023 | ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000294CC87 | UniProt:M0U1D2 |
| MapMan:15.5.41 | : | : | : | : | : |
Description
Pollen-specific protein SF3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G18250_001]
Coordinates
chr9:+:12795529..12798829
Molecular Weight (calculated)
23044.5 Da
IEP (calculated)
8.663
GRAVY (calculated)
-0.441
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMLFGGTT QKCQACRKTV YLVDQLAADG RIYHRACFRC HHCRGTLKFS NYSSIEGVLY CKPHYDQLFK MTGSLDKSFE GAPKSAKIDR SSGQQGVANS
101: RYASIFLGTR DKCVECKKTV YPIEKVAVDG NSYHRPCFRC THGGCTISPS NFVTHEGRLY CKHHHAQLFM TKGNFSSFTK VEEDKHEDIL LQVPSDHVAV
201: EGGQVS
101: RYASIFLGTR DKCVECKKTV YPIEKVAVDG NSYHRPCFRC THGGCTISPS NFVTHEGRLY CKHHHAQLFM TKGNFSSFTK VEEDKHEDIL LQVPSDHVAV
201: EGGQVS
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.