Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G194800.1 | Wheat | cytosol | 83.29 | 83.82 |
| TraesCS7A01G193500.2 | Wheat | cytosol | 80.73 | 81.94 |
| TraesCS7B01G098800.3 | Wheat | cytosol | 78.94 | 80.96 |
| GSMUA_Achr9P18250_001 | Banana | cytosol | 8.24 | 51.46 |
| GSMUA_Achr8P25860_001 | Banana | cytosol | 7.61 | 48.51 |
| EER89500 | Sorghum | cytosol | 51.28 | 44.75 |
| Zm00001d037252_P002 | Maize | cytosol | 49.49 | 43.84 |
| HORVU5Hr1G028180.1 | Barley | cytosol | 6.6 | 43.37 |
| HORVU5Hr1G031550.3 | Barley | cytosol | 2.41 | 31.31 |
| HORVU6Hr1G060580.5 | Barley | plastid | 4.51 | 28.16 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G039480.4 | EnsemblPlantsGene:HORVU7Hr1G039480 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001781 | InterPro:Znf_LIM | PFAM:PF00412 | PFscan:PS50023 | SEG:seg | SMART:SM00132 |
| SUPFAM:SSF57716 | UniParc:UPI000B469776 | UniProt:A0A287W4U1 | MapMan:15.5.41 | : | : |
Description
No Description!
Coordinates
chrchr7H:+:103702091..103712317
Molecular Weight (calculated)
138646.0 Da
IEP (calculated)
4.375
GRAVY (calculated)
-0.988
Length
1287 amino acids
Sequence
(BLAST)
(BLAST)
0001: EFHCSHDLNK AAVAAVHQSR TDAMIYNMLA WLCYAPVIRA IIASFTQFSN YSSIEGVLYC KPHYDQILKS TGSLEKSFEG VTRSAKSEKT NGPKGQQNSR
0101: FSSMFVGTQD KCVVCNKTVY PLEKVDLNGG SYHKSCFRCT HGGCTLSPSN NVTHEGKLYC KTHHSQLFMV KGNFSQFEEN TANAKVAVEK LPETGEATNK
0201: PGQGDEVGEK TSENELIADE PSQKDVAAEK QSQSSIDVAK PSESTVKKSA ESESVTESES KSPVANNKPL ESSAEKPPQS SVVDSKPSGS SVAIRKPWQR
0301: SLPTNKPLVS SASTEKPSPS DAAIEKPSSS NGTNVKPLDS STVVKKSWQR SLPTDNPQQS MLPSDKPAST SADDVKSSES SKVVKKTWQR PVVAENQKQN
0401: SGPTEKPTPT SDTKPLDSST AIKRPWGRRI ASEKSLQSSE VDMKPVETST VVTVLQQPNE EPPQTDAAVL QQPSEELPQT NAAVLQQPSE EPPQPSADDV
0501: KPTEDTAVVV KKPWQFNSRT EKQPQTSVVD AKKTESTGAI KRQWKRNTSF EKPSQSSAAA VTTTQSNVTV TKPAPSNFAV KKSWQRSITP KNQAASDMAT
0601: NKALQTKAVI EKPSQESSQE KPLQEKAPQI TVITEKSPQG SSQEKTSQEK APQIAAITEQ PSQESSQEKS SEAKTPQIAA TSKKPSQESS QGKAPQIAAI
0701: TRKPSEESSQ EKPLQTNEPS EEQLKTEETV EKQLQSEDIT DAKPQRDLMT QDDVSLKKIP EPEMDATSGD NLSDSQSKPI VEQTLQSQDV VVPQEATGQI
0801: MEAKNDAVIE QSSESQWVAP AEVTVEQPSQ QQKDASTEPS TDAIAKESLQ PEFDTATVKP SEPQIDAAAD QSAEQLSEPQ SAASVEEPVV HQSDASAEKP
0901: SKSQGDAAAV ELSGQPSEPQ NNASTGKPSE PKVDAITEER SERQTDATPH NLTEQPLEPQ KDGSIQKPLE TETNVVTDNP SESSLATGTL PESTRKISTT
1001: AEEPAQREIS DEILTPPQSI ALETTPESTP SIEEPADVGE ASVKISEDSS APEKPSEDAP VTPKKPSEDA PVTPEKPSEE VKASVQPAED NGALKKPSEE
1101: DEVSAEPSNI LDPEKPSEEK DDAKPVEDSV ALEKPTADKL SEEDKVSAEP SDDRVDPDKP SEKEVDTAVK PSEKEVDTAD KPSEDSMAVE EPVTNKPSEE
1201: DEASAESSNV RTELEKPSEE KEDDTVKPSE DSTALEKPST DKPSEEEEGA AREKASHADA AIEAPSHDDT DSATDKPSPA TETNIPA
0101: FSSMFVGTQD KCVVCNKTVY PLEKVDLNGG SYHKSCFRCT HGGCTLSPSN NVTHEGKLYC KTHHSQLFMV KGNFSQFEEN TANAKVAVEK LPETGEATNK
0201: PGQGDEVGEK TSENELIADE PSQKDVAAEK QSQSSIDVAK PSESTVKKSA ESESVTESES KSPVANNKPL ESSAEKPPQS SVVDSKPSGS SVAIRKPWQR
0301: SLPTNKPLVS SASTEKPSPS DAAIEKPSSS NGTNVKPLDS STVVKKSWQR SLPTDNPQQS MLPSDKPAST SADDVKSSES SKVVKKTWQR PVVAENQKQN
0401: SGPTEKPTPT SDTKPLDSST AIKRPWGRRI ASEKSLQSSE VDMKPVETST VVTVLQQPNE EPPQTDAAVL QQPSEELPQT NAAVLQQPSE EPPQPSADDV
0501: KPTEDTAVVV KKPWQFNSRT EKQPQTSVVD AKKTESTGAI KRQWKRNTSF EKPSQSSAAA VTTTQSNVTV TKPAPSNFAV KKSWQRSITP KNQAASDMAT
0601: NKALQTKAVI EKPSQESSQE KPLQEKAPQI TVITEKSPQG SSQEKTSQEK APQIAAITEQ PSQESSQEKS SEAKTPQIAA TSKKPSQESS QGKAPQIAAI
0701: TRKPSEESSQ EKPLQTNEPS EEQLKTEETV EKQLQSEDIT DAKPQRDLMT QDDVSLKKIP EPEMDATSGD NLSDSQSKPI VEQTLQSQDV VVPQEATGQI
0801: MEAKNDAVIE QSSESQWVAP AEVTVEQPSQ QQKDASTEPS TDAIAKESLQ PEFDTATVKP SEPQIDAAAD QSAEQLSEPQ SAASVEEPVV HQSDASAEKP
0901: SKSQGDAAAV ELSGQPSEPQ NNASTGKPSE PKVDAITEER SERQTDATPH NLTEQPLEPQ KDGSIQKPLE TETNVVTDNP SESSLATGTL PESTRKISTT
1001: AEEPAQREIS DEILTPPQSI ALETTPESTP SIEEPADVGE ASVKISEDSS APEKPSEDAP VTPKKPSEDA PVTPEKPSEE VKASVQPAED NGALKKPSEE
1101: DEVSAEPSNI LDPEKPSEEK DDAKPVEDSV ALEKPTADKL SEEDKVSAEP SDDRVDPDKP SEKEVDTAVK PSEKEVDTAD KPSEDSMAVE EPVTNKPSEE
1201: DEASAESSNV RTELEKPSEE KEDDTVKPSE DSTALEKPST DKPSEEEEGA AREKASHADA AIEAPSHDDT DSATDKPSPA TETNIPA
001: MSQLSNYNSF EGVLYCRPHF DQNFKRTGSL EKSFEGTPKI GKPDRPLEGE RPAGTKVSNM FGGTREKCVG CDKTVYPIEK VSVNGTLYHK SCFKCTHGGC
101: TISPSNYIAH EGKLYCKHHH IQLIKEKGNL SQLEGGGENA AKDKVVAA
101: TISPSNYIAH EGKLYCKHHH IQLIKEKGNL SQLEGGGENA AKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.