Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G219200.1 | Wheat | cytosol | 97.64 | 97.18 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 94.34 | 96.62 |
| EES05836 | Sorghum | cytosol | 82.55 | 87.5 |
| Zm00001d051262_P001 | Maize | cytosol | 80.66 | 82.61 |
| GSMUA_Achr1P03020_001 | Banana | cytosol | 64.62 | 76.97 |
| TraesCS2A01G370800.1 | Wheat | cytosol | 72.17 | 75.37 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 71.23 | 75.12 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 67.45 | 71.5 |
| GSMUA_Achr11P... | Banana | cytosol | 66.98 | 71.0 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 61.79 | 70.43 |
| TraesCS1A01G173600.1 | Wheat | cytosol | 66.04 | 70.0 |
| Zm00001d017382_P001 | Maize | cytosol | 81.13 | 69.64 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 65.57 | 69.15 |
| Os02t0641000-00 | Rice | mitochondrion | 42.92 | 59.09 |
| VIT_02s0025g03980.t01 | Wine grape | cytosol | 59.43 | 58.6 |
| PGSC0003DMT400014797 | Potato | cytosol | 44.34 | 55.95 |
| Solyc08g080740.2.1 | Tomato | cytosol | 50.47 | 55.15 |
| KRH59846 | Soybean | cytosol | 57.55 | 54.46 |
| Solyc08g007940.2.1 | Tomato | cytosol | 52.83 | 54.37 |
| KRH41147 | Soybean | cytosol | 56.13 | 52.19 |
| HORVU6Hr1G060580.5 | Barley | plastid | 48.58 | 50.0 |
| PGSC0003DMT400007915 | Potato | cytosol | 47.17 | 44.84 |
| TraesCS5A01G103100.2 | Wheat | cytosol | 44.34 | 40.0 |
| TraesCS7A01G193500.2 | Wheat | cytosol | 44.34 | 7.41 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G236600.1 | EnsemblPlantsGene:TraesCS6A01G236600 | Gene3D:2.10.110.10 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 |
| PANTHER:PTHR24206:SF30 | PFAM:PF00412 | PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 |
| SUPFAM:SSF57716 | TIGR:cd09440 | MapMan:15.5.41 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:445777984..445779110
Molecular Weight (calculated)
22815.9 Da
IEP (calculated)
7.578
GRAVY (calculated)
-0.383
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTGTQDKC KTCDKTVHFI DLLTADGVSY HKTCFKCSHC KGTLSMCNYS SMDGVLYCKT HFEQLFKETG NFSKNFTPGG KSAEKSEAKA PSKMSSAFSG
101: TQDKCAACQK TVYPLEKLTL EGECYHKSCF KCSHGGCILT TSSYAALNGI LYCKIHFSQL FKEKGSYNHL IKTAQTKKEN VEAAAAAEAG AEAAAAAAAA
201: AAEPEAPPQD EE
101: TQDKCAACQK TVYPLEKLTL EGECYHKSCF KCSHGGCILT TSSYAALNGI LYCKIHFSQL FKEKGSYNHL IKTAQTKKEN VEAAAAAEAG AEAAAAAAAA
201: AAEPEAPPQD EE
001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
Arabidopsis Description
PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.