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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • endoplasmic reticulum 1
  • golgi 1
  • extracellular 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, endoplasmic reticulum, extracellular, golgi, nucleus
BaCelLo:endoplasmic reticulum, extracellular, golgi
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra033233.1-P Field mustard cytosol 93.66 93.66
CDX90059 Canola cytosol 93.66 93.66
CDY15152 Canola cytosol 92.68 92.68
Bra032650.1-P Field mustard cytosol 91.22 91.22
CDY38028 Canola cytosol 91.22 91.22
CDY01571 Canola cytosol 90.73 90.73
CDX86962 Canola cytosol 55.61 83.21
KRH65108 Soybean cytosol 68.78 68.45
KRH48190 Soybean cytosol 69.27 67.62
AT3G61230.1 Thale cress cytosol 67.8 65.26
AT2G45800.1 Thale cress cytosol 71.71 65.04
Solyc10g017520.2.1 Tomato cytosol 66.83 64.62
PGSC0003DMT400026590 Potato cytosol 66.83 64.62
KRH00704 Soybean cytosol 66.34 62.96
KRH40492 Soybean cytosol 66.83 62.56
VIT_15s0046g03370.t01 Wine grape cytosol 66.83 62.27
PGSC0003DMT400000453 Potato cytosol 66.34 61.54
Solyc01g094320.2.1 Tomato cytosol 66.83 61.44
PGSC0003DMT400055738 Potato cytosol 63.41 57.27
Solyc05g049870.2.1 Tomato cytosol 63.41 57.02
AT2G39900.1 Thale cress cytosol 54.15 55.5
AT3G55770.7 Thale cress cytosol 53.66 47.21
AT1G10200.1 Thale cress cytosol 43.41 46.84
Protein Annotations
MapMan:15.5.41Gene3D:2.10.110.10EntrezGene:839267UniProt:A0A178WGL7ProteinID:AAF78411.1ProteinID:AEE27334.1
EMBL:AK317367ArrayExpress:AT1G01780EnsemblPlantsGene:AT1G01780RefSeq:AT1G01780TAIR:AT1G01780RefSeq:AT1G01780-TAIR-G
EnsemblPlants:AT1G01780.1TAIR:AT1G01780.1Unigene:At.72422EMBL:BT025779GO:GO:0003674GO:GO:0003779
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005856GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0046872GO:GO:0051015
GO:GO:0051017InterPro:IPR001781RefSeq:NP_171683.1ProteinID:OAP16252.1PFAM:PF00412PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281ScanProsite:PS00478PFscan:PS50023PANTHER:PTHR24206PANTHER:PTHR24206:SF22
UniProt:Q1ECF5SMART:SM00132SUPFAM:SSF57716UniParc:UPI0000162BF2InterPro:Znf_LIM:
Description
PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
Coordinates
chr1:+:282761..284245
Molecular Weight (calculated)
22990.2 Da
IEP (calculated)
7.192
GRAVY (calculated)
-0.497
Length
205 amino acids
Sequence
(BLAST)
001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.