CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68273	Canola	cytosol	96.93	97.79
CDX83389	Canola	cytosol	96.93	97.79
CDX74767	Canola	cytosol	85.09	84.72
CDY18899	Canola	cytosol	84.21	84.58
CDY27358	Canola	cytosol	83.77	83.04
CDY37066	Canola	cytosol	82.89	82.53
AT2G45800.1	Thale cress	cytosol	81.14	81.86
CDY45697	Canola	cytosol	59.21	74.59
CDY56926	Canola	cytosol	69.3	74.53
CDY48936	Canola	cytosol	69.74	72.94
CDX89105	Canola	cytosol	66.67	72.04
CDX71757	Canola	cytosol	67.98	71.76
CDY15152	Canola	cytosol	59.65	66.34
CDX90059	Canola	cytosol	59.65	66.34
CDY38028	Canola	cytosol	58.77	65.37
KRH65108	Soybean	cytosol	58.77	65.05
CDY01571	Canola	cytosol	58.33	64.88
PGSC0003DMT400026590	Potato	cytosol	58.77	63.21
KRH48190	Soybean	cytosol	57.89	62.86
Solyc10g017520.2.1	Tomato	cytosol	58.33	62.74
CDX86962	Canola	cytosol	36.84	61.31
PGSC0003DMT400000453	Potato	cytosol	59.21	61.09
Solyc01g094320.2.1	Tomato	cytosol	59.21	60.54
KRH00704	Soybean	cytosol	57.02	60.19
VIT_15s0046g03370.t01	Wine grape	cytosol	57.89	60.0
KRH40492	Soybean	cytosol	56.58	58.9
CDX74822	Canola	cytosol	49.56	56.5
CDY60999	Canola	cytosol	49.56	56.5
CDY20498	Canola	cytosol	49.56	56.5
PGSC0003DMT400055738	Potato	cytosol	55.26	55.51
Solyc05g049870.2.1	Tomato	cytosol	55.26	55.26
CDX72203	Canola	cytosol	47.81	54.23
CDY27267	Canola	cytosol	47.81	54.23
CDY20647	Canola	cytosol	38.6	46.56
CDY31040	Canola	cytosol	38.16	46.03
CDX94916	Canola	cytosol	37.72	45.5
CDX93448	Canola	cytosol	37.28	44.74
CDY02959	Canola	mitochondrion	47.81	40.52
CDX76073	Canola	mitochondrion	47.37	40.0

Protein Annotations

EnsemblPlants:CDX95666	EnsemblPlantsGene:GSBRNA2T00101551001	Gene3D:2.10.110.10	GO:A0A078E2Y0	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412	PFscan:PS50023	ProteinID:CDX95666	ProteinID:CDX95666.1
ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0004EE7703	MapMan:15.5.41

Description

BnaC03g25470D

Coordinates

chrLK031890:-:546963..547966

Molecular Weight (calculated)

25119.3 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.682

Length

228 amino acids

Sequence
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKNCFRCSHC NGSLVISNYS SMDGVLYCKR HFEQLFKESV KSLHTGGKTD KTNDQLTRAP SKLSSFFSGT
101: QDKCATCQKT VYPLEKVTME GECFHKTCFK CAHSGCPLTH SSYASLNGVL YCKVHFNQLF LEKGSYNNVH QAAANHRRSA SSGASSPPHD DHKPEDEAVV
201: PEGEEGEGKK EEEAAPEAAG EEPEPKAE

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.