CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74767	Canola	cytosol	97.8	96.94
CDY27358	Canola	cytosol	91.19	90.0
CDY37066	Canola	cytosol	90.75	89.96
AT2G45800.1	Thale cress	cytosol	85.02	85.4
CDY68273	Canola	cytosol	84.58	84.96
CDX83389	Canola	cytosol	84.58	84.96
CDX95666	Canola	cytosol	84.58	84.21
CDY45697	Canola	cytosol	62.56	78.45
CDY56926	Canola	cytosol	72.69	77.83
CDX89105	Canola	cytosol	71.81	77.25
CDY48936	Canola	cytosol	72.69	75.69
CDX71757	Canola	cytosol	71.37	75.0
CDY15152	Canola	cytosol	63.88	70.73
CDX90059	Canola	cytosol	63.88	70.73
CDX86962	Canola	cytosol	42.29	70.07
CDY38028	Canola	cytosol	63.0	69.76
CDY01571	Canola	cytosol	62.56	69.27
KRH65108	Soybean	cytosol	61.23	67.48
KRH48190	Soybean	cytosol	60.35	65.24
Solyc10g017520.2.1	Tomato	cytosol	60.35	64.62
PGSC0003DMT400026590	Potato	cytosol	60.35	64.62
PGSC0003DMT400000453	Potato	cytosol	62.56	64.25
VIT_15s0046g03370.t01	Wine grape	cytosol	62.11	64.09
Solyc01g094320.2.1	Tomato	cytosol	62.56	63.68
KRH00704	Soybean	cytosol	59.47	62.5
KRH40492	Soybean	cytosol	59.03	61.19
PGSC0003DMT400055738	Potato	cytosol	59.47	59.47
Solyc05g049870.2.1	Tomato	cytosol	59.03	58.77
CDX74822	Canola	cytosol	51.54	58.5
CDY60999	Canola	cytosol	51.54	58.5
CDY20498	Canola	cytosol	51.54	58.5
CDX72203	Canola	cytosol	50.22	56.72
CDY27267	Canola	cytosol	50.22	56.72
CDY20647	Canola	cytosol	40.97	49.21
CDY31040	Canola	cytosol	40.53	48.68
CDX94916	Canola	cytosol	40.09	48.15
CDX93448	Canola	cytosol	39.65	47.37
CDY02959	Canola	mitochondrion	51.1	43.12
CDX76073	Canola	mitochondrion	50.66	42.59

Protein Annotations

EnsemblPlants:CDY18899	EnsemblPlantsGene:GSBRNA2T00006089001	Gene3D:2.10.110.10	GO:A0A078G083	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ProteinID:CDY18899	ProteinID:CDY18899.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0004EEA127	UniProt:A0A078G083	MapMan:15.5.41	:	:

Description

BnaC04g04510DBnaC04g04510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G083]

Coordinates

chrLK032090:+:189960..190818

Molecular Weight (calculated)

24892.0 Da

IEP (calculated)

6.653

GRAVY (calculated)

-0.628

Length

227 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCSHC NGTLVISNYS SMDGVLYCKT HFEQLFKESG NFSKNFQTGK TEKSNDQMTR APSKLSSFFS
101: GTQDKCATCH KTVYPLEKVN MEGECYHKTC FKCAHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNN VHQAAAKHRR SASSGASSPP SEEQKPEDNT
201: SIPGGEGGEE EVAPEAAGEE PEPVAES

Best Arabidopsis Sequence Match ( AT2G45800.1 )
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES

Arabidopsis Description

PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.