Factsheet for VIT_13s0019g03280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0042g01070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39900.1	VIT_10s0042g01070.t01	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15005	Soybean	cytosol	87.83	87.83
Solyc05g052780.2.1	Tomato	cytosol	87.3	87.3
PGSC0003DMT400069763	Potato	cytosol	87.3	87.3
GSMUA_Achr6P14980_001	Banana	cytosol	87.3	86.84
GSMUA_Achr10P...	Banana	cytosol	86.24	85.79
KRG97787	Soybean	cytosol	88.36	84.34
KRH31081	Soybean	cytosol	88.36	83.5
Bra005003.1-P	Field mustard	cytosol	84.13	79.9
CDY20498	Canola	cytosol	84.13	79.5
CDY60999	Canola	cytosol	84.13	79.5
CDX74822	Canola	cytosol	84.13	79.5
CDY27267	Canola	cytosol	84.13	79.1
CDX72203	Canola	cytosol	84.13	79.1
Bra007189.1-P	Field mustard	cytosol	83.6	78.61
Os03t0266100-01	Rice	plasma membrane	81.48	78.57
AT2G39900.1	Thale cress	cytosol	82.01	77.5
EER95125	Sorghum	cytosol	78.84	75.63
Zm00001d028550_P001	Maize	extracellular, mitochondrion	78.84	75.25
TraesCS4B01G212600.1	Wheat	cytosol	78.84	73.04
TraesCS4D01G213600.1	Wheat	cytosol	78.84	73.04
AT3G55770.7	Thale cress	cytosol	85.19	69.1
CDY02959	Canola	mitochondrion	84.66	59.48
CDX76073	Canola	mitochondrion	84.13	58.89
VIT_15s0046g03370.t01	Wine grape	cytosol	68.25	58.64
VIT_17s0000g07820.t01	Wine grape	cytosol	56.08	58.24
VIT_02s0025g03980.t01	Wine grape	cytosol	65.61	57.67
VIT_03s0091g01010.t01	Wine grape	cytosol	57.67	56.19
VIT_18s0001g09040.t01	Wine grape	cytosol	56.61	54.31
KRH73124	Soybean	cytosol	46.03	51.79
Bra014721.1-P	Field mustard	cytosol, mitochondrion	84.13	51.13

Protein Annotations

EntrezGene:100263273	wikigene:100263273	MapMan:15.5.41	Gene3D:2.10.110.10	UniProt:A5BSA7	EMBL:AM469183
ProteinID:CAN81425	ProteinID:CAN81425.1	ProteinID:CBI31546	ProteinID:CBI31546.3	EMBL:FN595998	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	EntrezGene:LOC100263273	wikigene:LOC100263273	PFAM:PF00412
ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	SMART:SM00132	SUPFAM:SSF57716
TIGR:TC53066	UniParc:UPI00015248AD	ArrayExpress:VIT_13s0019g03280	EnsemblPlantsGene:VIT_13s0019g03280	EnsemblPlants:VIT_13s0019g03280.t01	unigene:Vvi.7325
RefSeq:XP_002279922	RefSeq:XP_002279922.1	RefSeq:XP_010658484.1	InterPro:Znf_LIM	:	:

Description

No Description!

Coordinates

chr13:-:4338690..4342831

Molecular Weight (calculated)

20780.8 Da

IEP (calculated)

9.024

GRAVY (calculated)

-0.418

Length

189 amino acids

Sequence
(BLAST)

001: MSFIGTQQKC KACLKTVYPV EQLSADGVVY HKSCFKCSHC NGTLKLSNYS SMEGVLYCKP HFEQLFKESG NFNKNFQSPA KSAEKLTPEL TRSPSKAASM
101: FSGTQEKCAT CGKTAYPLEK VTVESQAYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASMK RSAASVPDA

Best Arabidopsis Sequence Match ( AT3G55770.3 )
(BLAST)

001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.