Factsheet for VIT_18s0001g09040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10200.1	VIT_05s0020g02130.t01	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61425	Soybean	cytosol	88.32	88.78
KRH52104	Soybean	cytosol	87.82	88.27
Solyc12g088320.1.1	Tomato	cytosol	83.76	88.24
PGSC0003DMT400030205	Potato	cytosol	83.25	87.7
Solyc04g077780.2.1	Tomato	cytosol	84.77	86.53
PGSC0003DMT400027522	Potato	cytosol	84.77	86.53
KRH05574	Soybean	cytosol	85.79	86.22
KRG88767	Soybean	cytosol	84.77	85.2
CDY20647	Canola	cytosol	80.2	83.6
VIT_03s0091g01010.t01	Wine grape	cytosol	82.23	83.51
Bra018454.1-P	Field mustard	cytosol	79.7	83.07
CDY31040	Canola	cytosol	79.7	83.07
CDX94916	Canola	cytosol	79.19	82.54
AT1G10200.1	Thale cress	cytosol	79.19	82.11
CDX93448	Canola	cytosol	78.68	81.58
Bra019956.1-P	Field mustard	cytosol	78.68	81.58
VIT_17s0000g07820.t01	Wine grape	cytosol	69.04	74.73
VIT_13s0019g03280.t01	Wine grape	cytosol	54.31	56.61
VIT_02s0025g03980.t01	Wine grape	cytosol	50.76	46.51
VIT_15s0046g03370.t01	Wine grape	cytosol	51.27	45.91

Protein Annotations

EntrezGene:100253922	wikigene:100253922	MapMan:15.5.41	Gene3D:2.10.110.10	UniProt:A5BYE7	EMBL:AM475696
ProteinID:CAN72849	ProteinID:CAN72849.1	ProteinID:CBI19396	ProteinID:CBI19396.3	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0046872	GO:GO:0051015	GO:GO:0051017	InterPro:IPR001781	EntrezGene:LOC100253922	wikigene:LOC100253922
PFAM:PF00412	ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI00015224DB	ArrayExpress:VIT_18s0001g09040	EnsemblPlantsGene:VIT_18s0001g09040	EnsemblPlants:VIT_18s0001g09040.t01	unigene:Vvi.20672
RefSeq:XP_002285355	RefSeq:XP_002285355.1	InterPro:Znf_LIM	:	:	:

Description

No Description!

Coordinates

chr18:-:7537388..7539335

Molecular Weight (calculated)

21999.2 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.648

Length

197 amino acids

Sequence
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLGNYN SFEGVLYCRP HFDQLFKRTG SLDKSFEGTP KIVKPEKPID SEKPIANKVS
101: SMFAGTRDKC VGCKNTVYPT EKVTVNGTAY HKSCFKCTHG GCTISPSNYI AHEGRLYCKH HHTQLIKEKG NLSQLEGDHE KDTANEKVNG REVAAES

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.