Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50786 | Canola | cytosol | 98.11 | 98.11 |
| CDY43325 | Canola | cytosol | 95.9 | 95.9 |
| CDX90175 | Canola | cytosol | 95.27 | 95.27 |
| AT1G29260.1 | Thale cress | cytosol | 94.95 | 94.95 |
| PGSC0003DMT400023242 | Potato | cytosol | 81.07 | 81.33 |
| PGSC0003DMT400022498 | Potato | cytosol | 80.76 | 81.01 |
| KRH21268 | Soybean | cytosol | 81.07 | 80.82 |
| KRH11018 | Soybean | cytosol | 78.23 | 80.52 |
| Solyc03g062940.2.1 | Tomato | cytosol | 80.13 | 80.38 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 73.19 | 72.96 |
| VIT_10s0003g01320.t01 | Wine grape | cytosol | 80.76 | 65.64 |
| TraesCS3D01G373900.1 | Wheat | cytosol | 64.98 | 64.98 |
| Os02t0245100-01 | Rice | cytosol, golgi, plastid | 64.98 | 63.98 |
| EES04830 | Sorghum | cytosol, peroxisome, plastid | 63.72 | 62.93 |
| Zm00001d016170_P001 | Maize | cytosol | 62.78 | 62.38 |
| GSMUA_Achr10P... | Banana | mitochondrion | 46.06 | 45.62 |
| HORVU3Hr1G082800.3 | Barley | cytosol, mitochondrion | 40.69 | 40.06 |
| CDY47479 | Canola | cytosol | 22.71 | 17.39 |
| CDY26787 | Canola | cytosol | 22.71 | 17.39 |
| CDY32715 | Canola | nucleus | 21.77 | 16.59 |
| CDY35867 | Canola | cytosol | 14.83 | 16.55 |
| CDY43875 | Canola | nucleus | 22.08 | 16.43 |
| CDY02805 | Canola | nucleus | 21.45 | 16.23 |
| CDY29763 | Canola | endoplasmic reticulum | 17.03 | 16.02 |
| CDY70131 | Canola | cytosol | 10.41 | 15.79 |
| CDY62688 | Canola | nucleus | 21.14 | 15.73 |
| CDY43523 | Canola | nucleus | 21.45 | 14.32 |
| CDY06779 | Canola | nucleus | 21.45 | 14.02 |
| CDX81933 | Canola | nucleus | 21.14 | 13.84 |
| CDY03358 | Canola | nucleus | 21.45 | 13.49 |
| CDY48711 | Canola | nucleus | 21.14 | 13.32 |
| CDY21659 | Canola | nucleus | 19.56 | 13.11 |
| CDX81935 | Canola | nucleus | 19.56 | 13.05 |
| CDY21661 | Canola | nucleus | 20.82 | 13.04 |
| CDY48712 | Canola | plastid | 18.93 | 12.74 |
| CDY03357 | Canola | plastid | 18.93 | 12.69 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 13.25 | 12.35 |
| CDX82696 | Canola | nucleus | 16.4 | 11.82 |
| CDY58569 | Canola | cytosol | 22.4 | 11.16 |
| CDX88663 | Canola | nucleus | 22.4 | 11.16 |
| CDX82701 | Canola | nucleus | 11.99 | 9.79 |
| CDY70287 | Canola | nucleus | 3.79 | 6.56 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:23.4.1.1.2 | EnsemblPlants:CDX99799 | ProteinID:CDX99799 | ProteinID:CDX99799.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00108482001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR22850 | PANTHER:PTHR22850:SF183 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00019D349C | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
BnaC05g22210D
Coordinates
chrLK031914:-:128977..130113
Molecular Weight (calculated)
35556.9 Da
IEP (calculated)
5.331
GRAVY (calculated)
-0.168
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELSPGGPG VTESIAFDTA DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR
101: SFQEHAREVH SVDYNPTRRD SFLTASWDDT MKLWAMDRPA SIRTFKEHAY CVYQAVWNPK HGDIFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCVLAT SSVDKTIKVW DVRSYRAPLA VLNGHGYAVR KVKFSPHRRN LIASCSYDMT VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
101: SFQEHAREVH SVDYNPTRRD SFLTASWDDT MKLWAMDRPA SIRTFKEHAY CVYQAVWNPK HGDIFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCVLAT SSVDKTIKVW DVRSYRAPLA VLNGHGYAVR KVKFSPHRRN LIASCSYDMT VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
001: MPVFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELAPGAPG VTESVSYDTA DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
Arabidopsis Description
PEX7Peroxisome biogenesis protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XF57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.