CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032410.1-P	Field mustard	cytosol	99.66	99.66
CDY09554	Canola	cytosol	99.66	99.66
AT1G30630.1	Thale cress	cytosol	91.81	92.12
CDX79587	Canola	cytosol	87.71	87.71
CDX84626	Canola	cytosol	87.03	87.03
CDY67686	Canola	cytosol	86.01	86.01
CDY70767	Canola	cytosol	60.75	83.18
VIT_10s0003g05630.t01	Wine grape	extracellular	78.84	79.93
PGSC0003DMT400054458	Potato	cytosol	78.16	78.69
Os04t0612600-02	Rice	cytosol	75.77	77.35
PGSC0003DMT400080641	Potato	cytosol	76.79	77.32
GSMUA_Achr2P03150_001	Banana	cytosol	76.11	76.9
Solyc02g030250.2.1	Tomato	cytosol	76.11	76.63
EES12840	Sorghum	cytosol	74.4	75.96
KRH11873	Soybean	endoplasmic reticulum	74.74	75.52
GSMUA_Achr7P16810_001	Banana	cytosol	74.06	75.35
TraesCS2A01G424700.2	Wheat	golgi	73.38	74.91
TraesCS2D01G422600.1	Wheat	cytosol	73.38	74.91
KRH36897	Soybean	endoplasmic reticulum	74.06	74.83
TraesCS2B01G444400.2	Wheat	extracellular	73.04	74.56
Solyc02g069590.2.1	Tomato	nucleus	68.94	71.89
Zm00001d026283_P001	Maize	extracellular	73.72	69.01
Zm00001d050474_P001	Maize	cytosol	17.06	67.57
Zm00001d036659_P001	Maize	cytosol	33.11	67.36
Zm00001d026438_P002	Maize	plastid	66.89	66.67
Os04t0644700-00	Rice	plasma membrane	66.55	65.66
HORVU2Hr1G099460.4	Barley	cytosol, plastid	65.19	65.64
OQU82434	Sorghum	plastid	66.21	65.54
Zm00001d042031_P001	Maize	cytosol	18.77	64.71
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.48	60.0
Zm00001d016183_P001	Maize	cytosol	38.23	42.11
Zm00001d041399_P001	Maize	cytosol	20.48	37.04
Zm00001d000079_P001	Maize	cytosol	16.04	30.92

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	GO:A0A078ERX7	unigene:Bna.933	EnsemblPlants:CDY02313	ProteinID:CDY02313
ProteinID:CDY02313.1	InterPro:Coatomer_esu	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	EnsemblPlantsGene:GSBRNA2T00113769001	InterPro:IPR011990	PFAM:PF04733
PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDFD8E
SEG:seg	:	:	:	:	:

Description

BnaA09g25890D

Coordinates

chrLK031933:-:295857..297779

Molecular Weight (calculated)

32632.9 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.158

Length

293 amino acids

Sequence
(BLAST)

001: MASMAAGPDH LFNLRNSFYL GAYQAAINNS EIPNLSQEDI VERDCLVHRS YIALGSYQLV INEIDEASAT PLQAVKLLAM YLSTPENKES TIASLREWLA
101: DPTAGSNATV RLIAGTIFMH EEDYSEALKH THSGGTMDLH ALNVQIFIKM HRSDYAEKQL RVMQQFDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFQDFS
201: EKYPMTSLIL NSKAVCCMHM GNFEEAETLL LDALNKDAKD PETLANLVVC SIHVGKPSPR YLSQLKLSHP EHVLVKRAAS AEDNFERALQ SFA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.