Factsheet for Zm00001d042031_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.88	73.0
Zm00001d041399_P001	Maize	cytosol	87.06	45.68
Zm00001d000079_P001	Maize	cytosol	63.53	35.53
Os04t0612600-02	Rice	cytosol	84.71	25.09
Zm00001d026283_P001	Maize	extracellular	85.88	23.32
GSMUA_Achr2P03150_001	Banana	cytosol	72.94	21.38
VIT_10s0003g05630.t01	Wine grape	extracellular	70.59	20.76
AT2G34840.1	Thale cress	cytosol	70.59	20.48
Solyc02g030250.2.1	Tomato	cytosol	68.24	19.93
CDX84626	Canola	cytosol	68.24	19.8
CDX79587	Canola	cytosol	68.24	19.8
Bra022994.1-P	Field mustard	cytosol	68.24	19.8
PGSC0003DMT400080641	Potato	cytosol	67.06	19.59
AT1G30630.1	Thale cress	cytosol	67.06	19.52
CDY67686	Canola	cytosol	67.06	19.45
Bra021935.1-P	Field mustard	cytosol	67.06	19.45
PGSC0003DMT400054458	Potato	cytosol	64.71	18.9
CDY09554	Canola	cytosol	64.71	18.77
CDY02313	Canola	cytosol	64.71	18.77
Bra032410.1-P	Field mustard	cytosol	64.71	18.77
GSMUA_Achr7P16810_001	Banana	cytosol	63.53	18.75
CDY70767	Canola	cytosol	43.53	17.29
KRH36897	Soybean	endoplasmic reticulum	58.82	17.24
KRH11873	Soybean	endoplasmic reticulum	57.65	16.9
Zm00001d026438_P002	Maize	plastid	57.65	16.67
Solyc02g069590.2.1	Tomato	nucleus	27.06	8.19
Zm00001d016183_P001	Maize	cytosol	9.41	3.01
Zm00001d036659_P001	Maize	cytosol	0.0	0.0
Zm00001d050474_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d042031_P001	EnsemblPlants:Zm00001d042031_T001	EnsemblPlantsGene:Zm00001d042031	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	InterPro:Coatomer_esu
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	PFAM:PF04733	ProteinID:ONM34353.1
UniParc:UPI000845592C	UniProt:A0A1D6N0N9	MapMan:22.3.1.3	:	:	:

Description

Coatomer subunit epsilon-1

Coordinates

chr3:-:147915721..147920794

Molecular Weight (calculated)

9305.2 Da

IEP (calculated)

4.625

GRAVY (calculated)

0.258

Length

85 amino acids

Sequence
(BLAST)

1: MVISEIDSSI ATSLQAVKLL ALYLTGDKEG AISSLKEWLS DSATGSNLVL RLIAGIIFMR EQDYNEALKH THSGGTLDLY VYLFP

Best Arabidopsis Sequence Match ( AT2G34840.1 )
(BLAST)

001: MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA
101: DSTIGNNDTL RLIAGIIFMH EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFEDFS
201: EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA

Arabidopsis Description

Coatomer subunit epsilon-2 [Source:UniProtKB/Swiss-Prot;Acc:O64748]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.