Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032410.1-P | Field mustard | cytosol | 92.47 | 92.15 |
| CDY09554 | Canola | cytosol | 92.47 | 92.15 |
| CDY02313 | Canola | cytosol | 92.12 | 91.81 |
| AT2G34840.1 | Thale cress | cytosol | 86.64 | 86.35 |
| VIT_10s0003g05630.t01 | Wine grape | extracellular | 81.51 | 82.35 |
| GSMUA_Achr2P03150_001 | Banana | cytosol | 79.11 | 79.66 |
| PGSC0003DMT400054458 | Potato | cytosol | 79.11 | 79.38 |
| Os04t0612600-02 | Rice | cytosol | 77.4 | 78.75 |
| PGSC0003DMT400080641 | Potato | cytosol | 78.08 | 78.35 |
| Solyc02g030250.2.1 | Tomato | cytosol | 78.08 | 78.35 |
| EES12840 | Sorghum | cytosol | 76.37 | 77.7 |
| KRH11873 | Soybean | endoplasmic reticulum | 76.71 | 77.24 |
| GSMUA_Achr7P16810_001 | Banana | cytosol | 75.68 | 76.74 |
| KRH36897 | Soybean | endoplasmic reticulum | 76.03 | 76.55 |
| TraesCS2A01G424700.2 | Wheat | golgi | 75.0 | 76.31 |
| TraesCS2B01G444400.2 | Wheat | extracellular | 74.66 | 75.96 |
| TraesCS2D01G422600.1 | Wheat | cytosol | 74.32 | 75.61 |
| Solyc02g069590.2.1 | Tomato | nucleus | 70.21 | 72.95 |
| Zm00001d026283_P001 | Maize | extracellular | 75.68 | 70.61 |
| Zm00001d050474_P001 | Maize | cytosol | 17.81 | 70.27 |
| Zm00001d036659_P001 | Maize | cytosol | 34.25 | 69.44 |
| Os04t0644700-00 | Rice | plasma membrane | 69.18 | 68.01 |
| OQU82434 | Sorghum | plastid | 68.84 | 67.91 |
| HORVU2Hr1G099460.4 | Barley | cytosol, plastid | 67.12 | 67.35 |
| Zm00001d026438_P002 | Maize | plastid | 67.81 | 67.35 |
| Zm00001d042031_P001 | Maize | cytosol | 19.52 | 67.06 |
| HORVU2Hr1G099380.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.92 | 64.0 |
| Zm00001d016183_P001 | Maize | cytosol | 39.38 | 43.23 |
| Zm00001d041399_P001 | Maize | cytosol | 21.58 | 38.89 |
| Zm00001d000079_P001 | Maize | cytosol | 16.1 | 30.92 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:22.3.1.3 | EntrezGene:839943 | UniProt:A0A178W2E1 | ProteinID:AAD25750.1 | ProteinID:AEE31254.1 |
| EMBL:AF348588 | EMBL:AF370325 | ArrayExpress:AT1G30630 | EnsemblPlantsGene:AT1G30630 | RefSeq:AT1G30630 | TAIR:AT1G30630 |
| RefSeq:AT1G30630-TAIR-G | EnsemblPlants:AT1G30630.1 | TAIR:AT1G30630.1 | EMBL:AY063113 | EMBL:AY087474 | Unigene:At.21622 |
| InterPro:Coatomer_esu | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0006890 | GO:GO:0006891 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030126 | GO:GO:0030663 | GO:GO:0031410 |
| InterPro:IPR011990 | RefSeq:NP_174351.1 | ProteinID:OAP12438.1 | PFAM:PF04733 | PIRSF:PIRSF016478 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR10805 | PANTHER:PTHR10805:SF1 | UniProt:Q9SA78 | SUPFAM:SSF48452 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000009F92E | SEG:seg | : | : | : | : |
Description
Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
Coordinates
chr1:-:10858232..10860322
Molecular Weight (calculated)
32603.9 Da
IEP (calculated)
5.325
GRAVY (calculated)
-0.132
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.