Factsheet for Zm00001d016183_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050474_P001	Maize	cytosol	25.94	93.24
Zm00001d036659_P001	Maize	cytosol	50.38	93.06
Zm00001d026438_P002	Maize	plastid	56.77	51.36
OQU82434	Sorghum	plastid	53.38	47.97
CDY70767	Canola	cytosol	38.35	47.66
Os04t0644700-00	Rice	plasma membrane	51.13	45.79
Solyc02g069590.2.1	Tomato	nucleus	42.86	40.57
GSMUA_Achr2P03150_001	Banana	cytosol	43.98	40.34
GSMUA_Achr7P16810_001	Banana	cytosol	42.86	39.58
AT1G30630.1	Thale cress	cytosol	43.23	39.38
PGSC0003DMT400080641	Potato	cytosol	42.86	39.18
VIT_10s0003g05630.t01	Wine grape	extracellular	42.48	39.1
Bra021935.1-P	Field mustard	cytosol	42.86	38.91
AT2G34840.1	Thale cress	cytosol	42.48	38.57
PGSC0003DMT400054458	Potato	cytosol	42.11	38.49
Solyc02g030250.2.1	Tomato	cytosol	42.11	38.49
KRH11873	Soybean	endoplasmic reticulum	41.73	38.28
CDY67686	Canola	cytosol	42.11	38.23
CDY09554	Canola	cytosol	42.11	38.23
CDY02313	Canola	cytosol	42.11	38.23
CDX79587	Canola	cytosol	42.11	38.23
Bra032410.1-P	Field mustard	cytosol	42.11	38.23
KRH36897	Soybean	endoplasmic reticulum	41.35	37.93
CDX84626	Canola	cytosol	41.73	37.88
Bra022994.1-P	Field mustard	cytosol	41.73	37.88
Zm00001d026283_P001	Maize	extracellular	40.23	34.19
Zm00001d042031_P001	Maize	cytosol	3.01	9.41
Zm00001d000079_P001	Maize	cytosol	4.51	7.89
Zm00001d041399_P001	Maize	cytosol	4.51	7.41

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	UniProt:A0A1D6H657	ProteinID:AQK70276.1	InterPro:Cas1_AcylTrans_dom	InterPro:Coatomer_esu
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0006890	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011990	PFAM:PF04733
PFAM:PF07779	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000221C00A	EnsemblPlantsGene:Zm00001d016183	EnsemblPlants:Zm00001d016183_P001	EnsemblPlants:Zm00001d016183_T001	SEG:seg	:

Description

Coatomer subunit epsilon-2

Coordinates

chr5:-:148944954..148947782

Molecular Weight (calculated)

30242.6 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.194

Length

266 amino acids

Sequence
(BLAST)

001: MDDSSVKAED QTMLLEEGGQ AMAAKPAYTS LTSQILRLIF MDQLLLENRL TLRAISEFGG YLLYFYICDR TNLLGESAKN YSRDLFLFLY FLLIIVAAMT
101: SFKDIKQRDE FICVQREIRR QPQHWTDHAK KQLRVMQQLD EDHTLTQLTN AWVDLVLGGS KIQEARLIFQ DLSDKYPTTC TILNGKALCS THMGNFEDAE
201: GLLLESLNKD AKDTKTLANL TVCSLNLGKP TTRYLNQLKL AHPDHALVKR MSSAVESFDR ACQAMA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.