CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050474_P001	Maize	cytosol	23.65	94.59
Zm00001d026438_P002	Maize	plastid	92.91	93.54
Zm00001d036659_P001	Maize	cytosol	44.26	90.97
Os04t0644700-00	Rice	plasma membrane	82.77	82.49
GSMUA_Achr2P03150_001	Banana	cytosol	68.92	70.34
PGSC0003DMT400080641	Potato	cytosol	68.92	70.1
Solyc02g030250.2.1	Tomato	cytosol	68.58	69.76
AT1G30630.1	Thale cress	cytosol	67.91	68.84
PGSC0003DMT400054458	Potato	cytosol	67.57	68.73
GSMUA_Achr7P16810_001	Banana	cytosol	66.55	68.4
VIT_10s0003g05630.t01	Wine grape	extracellular	66.55	68.17
CDY67686	Canola	cytosol	65.88	66.55
CDX84626	Canola	cytosol	65.88	66.55
CDX79587	Canola	cytosol	65.88	66.55
Bra021935.1-P	Field mustard	cytosol	65.88	66.55
CDY70767	Canola	cytosol	47.97	66.36
CDY09554	Canola	cytosol	65.54	66.21
CDY02313	Canola	cytosol	65.54	66.21
Bra032410.1-P	Field mustard	cytosol	65.54	66.21
Bra022994.1-P	Field mustard	cytosol	65.2	65.87
AT2G34840.1	Thale cress	cytosol	64.53	65.19
EES12840	Sorghum	cytosol	62.5	64.46
KRH11873	Soybean	endoplasmic reticulum	60.81	62.07
KRH36897	Soybean	endoplasmic reticulum	59.8	61.03
Solyc02g069590.2.1	Tomato	nucleus	57.77	60.85
Zm00001d016183_P001	Maize	cytosol	47.97	53.38

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	UniProt:A0A1Z5RFB0	InterPro:Coatomer_esu	GO:GO:0000139	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0031410	InterPro:IPR011990	EnsemblPlants:OQU82434	ProteinID:OQU82434
ProteinID:OQU82434.1	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	EnsemblPlantsGene:SORBI_3006G238500
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0003C6EEC6	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:57942291..57949048

Molecular Weight (calculated)

32203.6 Da

IEP (calculated)

6.072

GRAVY (calculated)

-0.090

Length

296 amino acids

Sequence
(BLAST)

001: MAASPSPDHL FGLRNSFYIG AYHAAITSSQ SLPAHALSPD DLVERDALLY RSYIAIGSHQ LVIGEIGPSA ATPLQAVKLL AVYLSGDAGN RESVVSRLRE
101: LLSDAAVGTN PILRLMAGTV FMHERDYAEA LKHTSSGGSM ELHALNVQIY LQMNRTDHAE KQLRVMQQLD EDHTLTQLAN AWIDLVMGGS KIQEAHLIFQ
201: DLSEKYPATC TILNGKALCS MHMGNFEDAE GLLLESLNKD AKDAETLANL TVCSLNLGKP ATRYLNQLKL AQPDHALVKR MSSAADSFDR ACQAMA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.