Factsheet for VIT_10s0003g05630.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 4
endoplasmic reticulum 2
vacuole 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080641	Potato	cytosol	85.12	84.54
Solyc02g030250.2.1	Tomato	cytosol	84.43	83.85
PGSC0003DMT400054458	Potato	cytosol	83.39	82.82
GSMUA_Achr2P03150_001	Banana	cytosol	83.05	82.76
CDX79587	Canola	cytosol	83.05	81.91
Bra021935.1-P	Field mustard	cytosol	82.7	81.57
AT1G30630.1	Thale cress	cytosol	82.35	81.51
CDX84626	Canola	cytosol	82.35	81.23
GSMUA_Achr7P16810_001	Banana	cytosol	80.62	80.9
Bra022994.1-P	Field mustard	cytosol	82.01	80.89
CDY67686	Canola	cytosol	82.01	80.89
CDY70767	Canola	cytosol	59.52	80.37
AT2G34840.1	Thale cress	cytosol	80.62	79.52
Os04t0612600-02	Rice	cytosol	78.89	79.44
CDY09554	Canola	cytosol	80.28	79.18
Bra032410.1-P	Field mustard	cytosol	80.28	79.18
CDY02313	Canola	cytosol	79.93	78.84
EES12840	Sorghum	cytosol	78.2	78.75
TraesCS2A01G424700.2	Wheat	golgi	77.85	78.4
TraesCS2B01G444400.2	Wheat	extracellular	77.85	78.4
TraesCS2D01G422600.1	Wheat	cytosol	77.51	78.05
KRH11873	Soybean	endoplasmic reticulum	76.82	76.55
KRH36897	Soybean	endoplasmic reticulum	75.78	75.52
Solyc02g069590.2.1	Tomato	nucleus	70.93	72.95
Zm00001d026283_P001	Maize	extracellular	78.89	72.84
HORVU2Hr1G099460.4	Barley	cytosol, plastid	71.28	70.79
Zm00001d042031_P001	Maize	cytosol	20.76	70.59
Zm00001d050474_P001	Maize	cytosol	17.99	70.27
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.88	69.0
Zm00001d036659_P001	Maize	cytosol	33.91	68.06
Zm00001d026438_P002	Maize	plastid	68.51	67.35
Os04t0644700-00	Rice	plasma membrane	69.2	67.34
OQU82434	Sorghum	plastid	68.17	66.55
Zm00001d016183_P001	Maize	cytosol	39.1	42.48
Zm00001d041399_P001	Maize	cytosol	23.53	41.98
Zm00001d000079_P001	Maize	cytosol	19.03	36.18

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100264563	wikigene:100264563	MapMan:22.3.1.3	ProteinID:CBI31080	ProteinID:CBI31080.3
InterPro:Coatomer_esu	UniProt:D7TKQ8	EMBL:FN595992	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030126	GO:GO:0031410	InterPro:IPR011990
EntrezGene:LOC100264563	wikigene:LOC100264563	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1
SUPFAM:SSF48452	TIGR:TC58198	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001984236	ArrayExpress:VIT_10s0003g05630	EnsemblPlantsGene:VIT_10s0003g05630
EnsemblPlants:VIT_10s0003g05630.t01	unigene:Vvi.684	RefSeq:XP_002270662	RefSeq:XP_002270662.1	RefSeq:XP_003632965	RefSeq:XP_003632965.1
SEG:seg	:	:	:	:	:

Description

Coatomer subunit epsilon [Source:UniProtKB/TrEMBL;Acc:D7TKQ8]

Coordinates

chr10:+:10471996..10480736

Molecular Weight (calculated)

32003.4 Da

IEP (calculated)

5.308

GRAVY (calculated)

-0.076

Length

289 amino acids

Sequence
(BLAST)

001: MAAPDLLFGL RNNFFLGAFQ AAINNSDIPN LSPEDSIERD CLVHRSYIAL GSYQLVINEI DSSAATPLQA VKLLALYLSS PENKESTISS LKELLGDPAI
101: GNNPILRLIA GIVFMHEQDY NEALKHTHPG GTMELHALNV QIFLKMHRSD YAEKQLKIMQ QMDEDHTLTQ LANAWLNLAV GGSKIQEAYL IFQDFSEKYQ
201: MTGLILNGKA VCCMHMGHFD EAESLLLEAL NKDAKDPETL ANLVVCSLHL GKQSSRYLSQ LKLSHPDHVL VTRASAAEEA FDRAVQTIA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.