Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 mitochondrion: 26136264 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26136264
doi
College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G444400.2 | Wheat | extracellular | 99.65 | 99.65 |
| TraesCS2D01G422600.1 | Wheat | cytosol | 99.3 | 99.3 |
| EES12840 | Sorghum | cytosol | 94.08 | 94.08 |
| Os04t0612600-02 | Rice | cytosol | 93.73 | 93.73 |
| HORVU2Hr1G099460.4 | Barley | cytosol, plastid | 89.2 | 87.97 |
| Zm00001d026283_P001 | Maize | extracellular | 93.38 | 85.62 |
| GSMUA_Achr2P03150_001 | Banana | cytosol | 81.53 | 80.69 |
| VIT_10s0003g05630.t01 | Wine grape | extracellular | 78.4 | 77.85 |
| GSMUA_Achr7P16810_001 | Banana | cytosol | 76.66 | 76.39 |
| Bra021935.1-P | Field mustard | cytosol | 77.35 | 75.77 |
| CDX79587 | Canola | cytosol | 77.35 | 75.77 |
| CDY67686 | Canola | cytosol | 77.0 | 75.43 |
| Bra022994.1-P | Field mustard | cytosol | 77.0 | 75.43 |
| CDX84626 | Canola | cytosol | 76.66 | 75.09 |
| AT1G30630.1 | Thale cress | cytosol | 76.31 | 75.0 |
| Solyc02g030250.2.1 | Tomato | cytosol | 75.96 | 74.91 |
| PGSC0003DMT400080641 | Potato | cytosol | 75.96 | 74.91 |
| CDY70767 | Canola | cytosol | 55.75 | 74.77 |
| AT2G34840.1 | Thale cress | cytosol | 76.31 | 74.74 |
| PGSC0003DMT400054458 | Potato | cytosol | 74.56 | 73.54 |
| Bra032410.1-P | Field mustard | cytosol | 74.91 | 73.38 |
| CDY02313 | Canola | cytosol | 74.91 | 73.38 |
| CDY09554 | Canola | cytosol | 74.91 | 73.38 |
| KRH11873 | Soybean | endoplasmic reticulum | 70.73 | 70.0 |
| KRH36897 | Soybean | endoplasmic reticulum | 70.03 | 69.31 |
| Solyc02g069590.2.1 | Tomato | nucleus | 62.72 | 64.06 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G424700.2 | EnsemblPlantsGene:TraesCS2A01G424700 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006810 | GO:GO:0006890 | GO:GO:0008150 | InterPro:Coatomer_esu | InterPro:IPR011990 |
| InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR10805 | PANTHER:PTHR10805:SF1 | PFAM:PF04733 | PIRSF:PIRSF016478 | SEG:seg |
| SUPFAM:SSF48452 | MapMan:22.3.1.3 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:678825688..678829079
Molecular Weight (calculated)
31666.9 Da
IEP (calculated)
4.999
GRAVY (calculated)
-0.029
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPDLLFNL RNLFYLGAYQ SAINNSDVPG LDADAAAERD VIVFRSYIAL GSYQLVISEI DSSAATSLQA VKLLALYLTG DKEGAISSLK EWLSDSAIGS
101: NPVLRLIAGI IFMHEQDYNE ALKHTHTGGT LDLHALNVQI FLKMHRSDYA DKQLKIMQQT DEDHTLTQLA NAWLDIAVGG SKIREAYLIF QDFAEKYPMT
201: GMVLNGKAVC CMHMGSFEEA ETLLLEALNK DAKDPETLAN LIVCNLHLGK PSSRYFSQLK LSHPDHVLVK TTTSAEDNFE RALQAVA
101: NPVLRLIAGI IFMHEQDYNE ALKHTHTGGT LDLHALNVQI FLKMHRSDYA DKQLKIMQQT DEDHTLTQLA NAWLDIAVGG SKIREAYLIF QDFAEKYPMT
201: GMVLNGKAVC CMHMGSFEEA ETLLLEALNK DAKDPETLAN LIVCNLHLGK PSSRYFSQLK LSHPDHVLVK TTTSAEDNFE RALQAVA
001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA
Arabidopsis Description
Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.