Factsheet for PGSC0003DMT400080641

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g030250.2.1	Tomato	cytosol	98.63	98.63
PGSC0003DMT400054458	Potato	cytosol	89.35	89.35
VIT_10s0003g05630.t01	Wine grape	extracellular	84.54	85.12
GSMUA_Achr2P03150_001	Banana	cytosol	80.76	81.03
GSMUA_Achr7P16810_001	Banana	cytosol	78.35	79.17
CDX79587	Canola	cytosol	79.04	78.5
CDX84626	Canola	cytosol	78.69	78.16
AT1G30630.1	Thale cress	cytosol	78.35	78.08
Bra021935.1-P	Field mustard	cytosol	78.35	77.82
Bra022994.1-P	Field mustard	cytosol	78.35	77.82
CDY67686	Canola	cytosol	78.35	77.82
Os04t0612600-02	Rice	cytosol	76.63	77.7
AT2G34840.1	Thale cress	cytosol	78.01	77.47
EES12840	Sorghum	cytosol	76.29	77.35
CDY09554	Canola	cytosol	77.66	77.13
Bra032410.1-P	Field mustard	cytosol	77.66	77.13
CDY02313	Canola	cytosol	77.32	76.79
KRH11873	Soybean	endoplasmic reticulum	75.94	76.21
CDY70767	Canola	cytosol	56.01	76.17
TraesCS2D01G422600.1	Wheat	cytosol	74.91	75.96
TraesCS2B01G444400.2	Wheat	extracellular	74.91	75.96
TraesCS2A01G424700.2	Wheat	golgi	74.91	75.96
KRH36897	Soybean	endoplasmic reticulum	75.26	75.52
Zm00001d050474_P001	Maize	cytosol	18.21	71.62
Zm00001d026283_P001	Maize	extracellular	76.29	70.93
OQU82434	Sorghum	plastid	70.1	68.92
Zm00001d036659_P001	Maize	cytosol	34.02	68.75
HORVU2Hr1G099460.4	Barley	cytosol, plastid	68.73	68.73
Zm00001d026438_P002	Maize	plastid	69.42	68.71
Zm00001d042031_P001	Maize	cytosol	19.59	67.06
Os04t0644700-00	Rice	plasma membrane	68.04	66.67
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.68	66.0
Zm00001d016183_P001	Maize	cytosol	39.18	42.86
Zm00001d041399_P001	Maize	cytosol	23.37	41.98
Zm00001d000079_P001	Maize	cytosol	16.84	32.24

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102582432	MapMan:22.3.1.3	InterPro:Coatomer_esu	GO:GO:0000139	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0031410	InterPro:IPR011990	UniProt:M1D3S3	PFAM:PF04733
EnsemblPlantsGene:PGSC0003DMG400031401	PGSC:PGSC0003DMG400031401	EnsemblPlants:PGSC0003DMT400080641	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294E646	RefSeq:XP_006356904.1	:	:

Description

Coatomer subunit epsilon-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400031401]

Coordinates

chr2:-:14411775..14419004

Molecular Weight (calculated)

32142.3 Da

IEP (calculated)

4.782

GRAVY (calculated)

-0.119

Length

291 amino acids

Sequence
(BLAST)

001: MASTGPDPLF GLRNNFYIGA YQAAINNSDV PNLSADDAVE RDTLVYRSYI ALGSYQLVIN EIDDSAATPL QAVKLLALYL SSPDNKETVI TSLHELLGDS
101: AIGNNPILRL IAGIVFMHEQ DYNEALKHTN AGGTMELHAL NVQIFIKMHR SDYAEKQLRI MQQADEDHTL TQLANAWLNL AVGGSKIQEA YLIFQDFSEK
201: NQMTSPILNG KAVCCMHMGN FDEAETLLLE ALNKDTKDSE TLANLVVCSL HLGKPYTRYL SQLKISHPDH MLVGRAASAE EIFDRAVQTV A

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.