CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 3
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0612600-02	Rice	cytosol	94.77	94.77
TraesCS2B01G444400.2	Wheat	extracellular	94.08	94.08
TraesCS2A01G424700.2	Wheat	golgi	94.08	94.08
TraesCS2D01G422600.1	Wheat	cytosol	93.73	93.73
Zm00001d026283_P001	Maize	extracellular	98.26	90.1
HORVU2Hr1G099460.4	Barley	cytosol, plastid	85.37	84.19
GSMUA_Achr2P03150_001	Banana	cytosol	81.88	81.03
VIT_10s0003g05630.t01	Wine grape	extracellular	78.75	78.2
GSMUA_Achr7P16810_001	Banana	cytosol	76.66	76.39
AT1G30630.1	Thale cress	cytosol	77.7	76.37
PGSC0003DMT400080641	Potato	cytosol	77.35	76.29
Solyc02g030250.2.1	Tomato	cytosol	77.35	76.29
CDY67686	Canola	cytosol	77.0	75.43
Bra021935.1-P	Field mustard	cytosol	77.0	75.43
CDX79587	Canola	cytosol	77.0	75.43
AT2G34840.1	Thale cress	cytosol	76.66	75.09
Bra022994.1-P	Field mustard	cytosol	76.66	75.09
PGSC0003DMT400054458	Potato	cytosol	75.96	74.91
CDY70767	Canola	cytosol	55.75	74.77
CDX84626	Canola	cytosol	76.31	74.74
CDY02313	Canola	cytosol	75.96	74.4
Bra032410.1-P	Field mustard	cytosol	75.96	74.4
CDY09554	Canola	cytosol	75.96	74.4
KRH11873	Soybean	endoplasmic reticulum	71.08	70.34
KRH36897	Soybean	endoplasmic reticulum	70.38	69.66
Solyc02g069590.2.1	Tomato	nucleus	64.11	65.48
OQU82434	Sorghum	plastid	64.46	62.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	EntrezGene:8072329	UniProt:C5YFP1	InterPro:Coatomer_esu	EnsemblPlants:EES12840
ProteinID:EES12840	ProteinID:EES12840.1	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030126	GO:GO:0031410	InterPro:IPR011990	PFAM:PF04733
PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	EnsemblPlantsGene:SORBI_3006G211800	SUPFAM:SSF48452	unigene:Sbi.5500
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A875DF	RefSeq:XP_002448512.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:56102116..56106755

Molecular Weight (calculated)

31424.7 Da

IEP (calculated)

5.317

GRAVY (calculated)

0.047

Length

287 amino acids

Sequence
(BLAST)

001: MASPDLLFNL RNLFYLGAYQ AAINNSDVPG LDADAAAERD AIVFRSYIAL GSYQLVISEI DSSAATSLQA VKLLALYLTG DKEGAISSLK EWLSDSAIGS
101: NPVLRLIAGI IFMHEQDYNE ALKHTHSGGT LDLHALNVQI FIKMHRSDYA EKQLKIMQQI DEDHTLTQLA NAWLGIAVGG SKIREAYLIF QDFAEKYPMT
201: GMVLNGKAVC CMHMGSFEEA ETLLLEALNK DAKDPETLAN LIVCNLHLGK PSSRFLSQLK LSHPDHVLVK NAASSEATFE RALQAVA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.