CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 24385303
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11873	Soybean	endoplasmic reticulum	97.24	97.24
CDX79587	Canola	cytosol	76.9	76.11
AT1G30630.1	Thale cress	cytosol	76.55	76.03
VIT_10s0003g05630.t01	Wine grape	extracellular	75.52	75.78
CDX84626	Canola	cytosol	76.21	75.43
Solyc02g030250.2.1	Tomato	cytosol	75.52	75.26
PGSC0003DMT400080641	Potato	cytosol	75.52	75.26
PGSC0003DMT400054458	Potato	cytosol	75.52	75.26
Bra022994.1-P	Field mustard	cytosol	75.86	75.09
CDY70767	Canola	cytosol	55.17	74.77
Bra021935.1-P	Field mustard	cytosol	75.17	74.4
Bra032410.1-P	Field mustard	cytosol	75.17	74.4
CDY09554	Canola	cytosol	75.17	74.4
CDY02313	Canola	cytosol	74.83	74.06
GSMUA_Achr2P03150_001	Banana	cytosol	73.79	73.79
CDY67686	Canola	cytosol	74.48	73.72
AT2G34840.1	Thale cress	cytosol	73.79	73.04
Os04t0612600-02	Rice	cytosol	70.34	71.08
GSMUA_Achr7P16810_001	Banana	cytosol	70.0	70.49
EES12840	Sorghum	cytosol	69.66	70.38
TraesCS2D01G422600.1	Wheat	cytosol	69.66	70.38
TraesCS2B01G444400.2	Wheat	extracellular	69.31	70.03
TraesCS2A01G424700.2	Wheat	golgi	69.31	70.03
Solyc02g069590.2.1	Tomato	nucleus	66.55	68.68
Zm00001d050474_P001	Maize	cytosol	16.9	66.22
Zm00001d036659_P001	Maize	cytosol	32.41	65.28
Zm00001d026283_P001	Maize	extracellular	69.31	64.22
HORVU2Hr1G099460.4	Barley	cytosol, plastid	62.76	62.54
Os04t0644700-00	Rice	plasma membrane	63.45	61.95
Zm00001d026438_P002	Maize	plastid	61.38	60.54
OQU82434	Sorghum	plastid	61.03	59.8
Zm00001d042031_P001	Maize	cytosol	17.24	58.82
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.66	57.0
Zm00001d016183_P001	Maize	cytosol	37.93	41.35
Zm00001d041399_P001	Maize	cytosol	20.0	35.8
Zm00001d000079_P001	Maize	cytosol	15.17	28.95

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	EntrezGene:547992	EMBL:ACUP02005400	EMBL:BT096837	UniProt:C6TGT0
InterPro:Coatomer_esu	EnsemblPlantsGene:GLYMA_09G030400	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030126	GO:GO:0031410	InterPro:IPR011990	EnsemblPlants:KRH36897
ProteinID:KRH36897	ProteinID:KRH36897.1	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001B16CB8	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:2511524..2514782

Molecular Weight (calculated)

32280.4 Da

IEP (calculated)

5.307

GRAVY (calculated)

-0.145

Length

290 amino acids

Sequence
(BLAST)

001: MATPDHLFNL RNNLYLGAYQ AAINSGDVTN LSQEDSLERD TLVHRCYIAL GQLQFVISEI HDDAPTPLQA VKLLALYFSS PDTKDSAIAS LKEWLADPAI
101: ANNATLRLVA GLVFLHENDF NEALKHTNAG GTMDLHALNV QIFIKMHRSD YAERQLRIMQ QIDEDHTLTQ LANAWLNLAV GGSKIQEAYL IFQDLSERYQ
201: STSLLLNGKA VCCMHMGNFD EAETLLVEAL NKDARDPETL ANLVVCCLHL GKPSNKSFSQ LKISHPEHVL VKRVSSAEES FDRALQSFSS

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.