Factsheet for Zm00001d000079_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042031_P001	Maize	cytosol	35.53	63.53
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	39.47	60.0
Zm00001d041399_P001	Maize	cytosol	40.79	38.27
Os04t0612600-02	Rice	cytosol	39.47	20.91
GSMUA_Achr2P03150_001	Banana	cytosol	37.5	19.66
Zm00001d026283_P001	Maize	extracellular	39.47	19.17
VIT_10s0003g05630.t01	Wine grape	extracellular	36.18	19.03
AT2G34840.1	Thale cress	cytosol	33.55	17.41
Solyc02g030250.2.1	Tomato	cytosol	32.89	17.18
CDY67686	Canola	cytosol	32.89	17.06
Bra021935.1-P	Field mustard	cytosol	32.89	17.06
GSMUA_Achr7P16810_001	Banana	cytosol	32.24	17.01
PGSC0003DMT400054458	Potato	cytosol	32.24	16.84
PGSC0003DMT400080641	Potato	cytosol	32.24	16.84
CDX84626	Canola	cytosol	32.24	16.72
CDX79587	Canola	cytosol	32.24	16.72
Bra022994.1-P	Field mustard	cytosol	32.24	16.72
AT1G30630.1	Thale cress	cytosol	30.92	16.1
CDY02313	Canola	cytosol	30.92	16.04
CDY09554	Canola	cytosol	30.92	16.04
Bra032410.1-P	Field mustard	cytosol	30.92	16.04
KRH11873	Soybean	endoplasmic reticulum	29.61	15.52
KRH36897	Soybean	endoplasmic reticulum	28.95	15.17
Zm00001d026438_P002	Maize	plastid	28.29	14.63
CDY70767	Canola	cytosol	15.13	10.75
Solyc02g069590.2.1	Tomato	nucleus	19.08	10.32
Zm00001d016183_P001	Maize	cytosol	7.89	4.51
Zm00001d036659_P001	Maize	cytosol	0.0	0.0
Zm00001d050474_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	UniProt:A0A1X7YEI6	InterPro:Coatomer_esu	GO:GO:0000469	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006810	GO:GO:0006890
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR011990	PFAM:PF04733	PFAM:PF06102
PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	InterPro:RRP36	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002208405	EnsemblPlantsGene:Zm00001d000079
EnsemblPlants:Zm00001d000079_P001	EnsemblPlants:Zm00001d000079_T001	SEG:seg	:	:	:

Description

Coatomer subunit epsilon-1

Coordinates

chrB73V4_ctg31:-:359763..361867

Molecular Weight (calculated)

17012.6 Da

IEP (calculated)

9.090

GRAVY (calculated)

-0.266

Length

152 amino acids

Sequence
(BLAST)

001: MDKNSKNKDK QLKSHPPKNA ESEILREHIK KEREAAKAGK RPYYLKKCEF LNPNTSFLSS LSVYLLIKWL LSVPQPDGDQ RDHACLSVFV QLVISEIDSS
101: VATSLQAMKL LALYLTGDKD GAISSLKEWL SDSAIGSNPV LRLIAGIIFM HE

Best Arabidopsis Sequence Match ( AT2G34840.1 )
(BLAST)

001: MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA
101: DSTIGNNDTL RLIAGIIFMH EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFEDFS
201: EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA

Arabidopsis Description

Coatomer subunit epsilon-2 [Source:UniProtKB/Swiss-Prot;Acc:O64748]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.