Factsheet for GSMUA_Achr7P16810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P03150_001	Banana	cytosol	91.67	91.03
VIT_10s0003g05630.t01	Wine grape	extracellular	80.9	80.62
PGSC0003DMT400080641	Potato	cytosol	79.17	78.35
Solyc02g030250.2.1	Tomato	cytosol	78.47	77.66
Os04t0612600-02	Rice	cytosol	77.08	77.35
TraesCS2A01G424700.2	Wheat	golgi	76.39	76.66
EES12840	Sorghum	cytosol	76.39	76.66
TraesCS2B01G444400.2	Wheat	extracellular	76.04	76.31
PGSC0003DMT400054458	Potato	cytosol	77.08	76.29
TraesCS2D01G422600.1	Wheat	cytosol	75.69	75.96
AT1G30630.1	Thale cress	cytosol	76.74	75.68
CDX79587	Canola	cytosol	76.04	74.74
Bra022994.1-P	Field mustard	cytosol	75.69	74.4
CDY09554	Canola	cytosol	75.35	74.06
CDY02313	Canola	cytosol	75.35	74.06
CDX84626	Canola	cytosol	75.35	74.06
Bra032410.1-P	Field mustard	cytosol	75.35	74.06
CDY67686	Canola	cytosol	75.0	73.72
Bra021935.1-P	Field mustard	cytosol	74.65	73.38
AT2G34840.1	Thale cress	cytosol	73.96	72.7
CDY70767	Canola	cytosol	53.47	71.96
KRH11873	Soybean	endoplasmic reticulum	71.53	71.03
KRH36897	Soybean	endoplasmic reticulum	70.49	70.0
Solyc02g069590.2.1	Tomato	nucleus	68.06	69.75
Zm00001d026283_P001	Maize	extracellular	75.69	69.65
Zm00001d050474_P001	Maize	cytosol	17.71	68.92
HORVU2Hr1G099460.4	Barley	cytosol, plastid	69.44	68.73
Zm00001d036659_P001	Maize	cytosol	34.03	68.06
Zm00001d026438_P002	Maize	plastid	68.4	67.01
OQU82434	Sorghum	plastid	68.4	66.55
Os04t0644700-00	Rice	plasma membrane	68.06	65.99
Zm00001d042031_P001	Maize	cytosol	18.75	63.53
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	21.18	61.0
Zm00001d016183_P001	Maize	cytosol	39.58	42.86
Zm00001d041399_P001	Maize	cytosol	21.88	38.89
Zm00001d000079_P001	Maize	cytosol	17.01	32.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	InterPro:Coatomer_esu	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0031410	EnsemblPlantsGene:GSMUA_Achr7G16810_001	EnsemblPlants:GSMUA_Achr7P16810_001	EnsemblPlants:GSMUA_Achr7T16810_001	InterPro:IPR011990
UniProt:M0TI68	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	SUPFAM:SSF48452
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029500EF	:	:	:	:

Description

Coatomer subunit epsilon-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G16810_001]

Coordinates

chr7:-:17302267..17307013

Molecular Weight (calculated)

32117.4 Da

IEP (calculated)

5.141

GRAVY (calculated)

-0.128

Length

288 amino acids

Sequence
(BLAST)

001: MAATPDLLFG LRNSFYLGAY QAAINSSDIP NLPADDALER DVLVHRSYIA LGSYQLVINE IDSSAPTALQ AVKLLALYLS ENKKAAISSL QEWFSHAEIS
101: NNPILRLIAG TIYMYEQDYN EALKHTNSGG SMELHALNVQ IFIKMHRSDY AEKQLKIMQQ IDEDHTLTQL ANAWLDLAMG GSKVQEAYLI FQDFSEKYQM
201: TGTILNGKAV CCMHMNRFDE AESLLLEALN KDAKDAETLA NLAVCSLHLG KPSSRYLNQL KLSHPDHMLV RCLASAEDNF DRAVQSIA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.