Factsheet for Os04t0644700-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050474_P001	Maize	cytosol	22.22	89.19
Zm00001d036659_P001	Maize	cytosol	41.08	84.72
OQU82434	Sorghum	plastid	82.49	82.77
Zm00001d026438_P002	Maize	plastid	81.82	82.65
GSMUA_Achr2P03150_001	Banana	cytosol	68.69	70.34
VIT_10s0003g05630.t01	Wine grape	extracellular	67.34	69.2
AT1G30630.1	Thale cress	cytosol	68.01	69.18
CDY70767	Canola	cytosol	49.49	68.69
GSMUA_Achr7P16810_001	Banana	cytosol	65.99	68.06
PGSC0003DMT400054458	Potato	cytosol	66.67	68.04
PGSC0003DMT400080641	Potato	cytosol	66.67	68.04
CDX79587	Canola	cytosol	66.67	67.58
Solyc02g030250.2.1	Tomato	cytosol	65.99	67.35
Os04t0612600-02	Rice	cytosol	64.98	67.25
CDX84626	Canola	cytosol	66.33	67.24
CDY67686	Canola	cytosol	66.33	67.24
Bra021935.1-P	Field mustard	cytosol	66.33	67.24
CDY02313	Canola	cytosol	65.66	66.55
CDY09554	Canola	cytosol	65.66	66.55
Bra032410.1-P	Field mustard	cytosol	65.66	66.55
Bra022994.1-P	Field mustard	cytosol	65.66	66.55
AT2G34840.1	Thale cress	cytosol	65.32	66.21
KRH11873	Soybean	endoplasmic reticulum	63.3	64.83
KRH36897	Soybean	endoplasmic reticulum	61.95	63.45
Solyc02g069590.2.1	Tomato	nucleus	55.22	58.36
Zm00001d016183_P001	Maize	cytosol	45.79	51.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	EntrezGene:4337189	ProteinID:BAF15974.1	ProteinID:BAS91302.1	ProteinID:CAD41918.2
InterPro:Coatomer_esu	ProteinID:EAZ32189.1	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030126	GO:GO:0030663	GO:GO:0031410	InterPro:IPR011990
EnsemblPlantsGene:Os04g0644700	EnsemblPlants:Os04t0644700-00	UniProt:P0C541	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805
PANTHER:PTHR10805:SF1	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00001B0BEB	RefSeq:XP_015636608.1	:

Description

Coatomer, epsilon subunit domain containing protein. (Os04t0644700-00)

Coordinates

chr4:+:32817477..32819752

Molecular Weight (calculated)

32077.7 Da

IEP (calculated)

6.119

GRAVY (calculated)

0.018

Length

297 amino acids

Sequence
(BLAST)

001: MAGAASPDHL FGLRNSFYVG AYQAVITGVQ AIPARAALSP DALAERDSLL YRSYIAIGSH QLVIDEIGPG AATPLQAVRL LTVYLSGGAG GKESAIRKLN
101: ELLADDAVGS NPILRLVAGT VLMHERDYAG ALKHTNSGGT MELLAMNVQI CLQMHRSDHA EKQLRIMQQL DEDHTLTQLA NAWVDLVMGG SKIQEAHLIF
201: QDLSEKYPAT CLILNGKALC LMHMGNFEDA EGLLLESLNK DAKDAETLAN LVVCSLNLGK SASRYLNQLK LAHPDHMLVK RMSSAEDSFD RACQAIS

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.