Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 3
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12840 | Sorghum | cytosol | 94.77 | 94.77 |
| TraesCS2A01G424700.2 | Wheat | golgi | 93.73 | 93.73 |
| TraesCS2D01G422600.1 | Wheat | cytosol | 93.38 | 93.38 |
| TraesCS2B01G444400.2 | Wheat | extracellular | 93.38 | 93.38 |
| Zm00001d042031_P001 | Maize | cytosol | 25.09 | 84.71 |
| GSMUA_Achr2P03150_001 | Banana | cytosol | 82.93 | 82.07 |
| HORVU2Hr1G099380.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 27.53 | 79.0 |
| VIT_10s0003g05630.t01 | Wine grape | extracellular | 79.44 | 78.89 |
| AT1G30630.1 | Thale cress | cytosol | 78.75 | 77.4 |
| Bra021935.1-P | Field mustard | cytosol | 78.75 | 77.13 |
| GSMUA_Achr7P16810_001 | Banana | cytosol | 77.35 | 77.08 |
| CDY67686 | Canola | cytosol | 78.4 | 76.79 |
| CDX79587 | Canola | cytosol | 78.4 | 76.79 |
| CDY70767 | Canola | cytosol | 57.14 | 76.64 |
| PGSC0003DMT400080641 | Potato | cytosol | 77.7 | 76.63 |
| Solyc02g030250.2.1 | Tomato | cytosol | 77.7 | 76.63 |
| Bra022994.1-P | Field mustard | cytosol | 78.05 | 76.45 |
| AT2G34840.1 | Thale cress | cytosol | 77.7 | 76.11 |
| CDX84626 | Canola | cytosol | 77.7 | 76.11 |
| CDY09554 | Canola | cytosol | 77.35 | 75.77 |
| Bra032410.1-P | Field mustard | cytosol | 77.35 | 75.77 |
| CDY02313 | Canola | cytosol | 77.35 | 75.77 |
| PGSC0003DMT400054458 | Potato | cytosol | 75.96 | 74.91 |
| KRH11873 | Soybean | endoplasmic reticulum | 71.78 | 71.03 |
| KRH36897 | Soybean | endoplasmic reticulum | 71.08 | 70.34 |
| Solyc02g069590.2.1 | Tomato | nucleus | 64.81 | 66.19 |
| Os04t0644700-00 | Rice | plasma membrane | 67.25 | 64.98 |
| Zm00001d041399_P001 | Maize | cytosol | 27.87 | 49.38 |
| Zm00001d000079_P001 | Maize | cytosol | 20.91 | 39.47 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:22.3.1.3 | EntrezGene:4336967 | EMBL:AB042115 | EMBL:AK060707 | EMBL:AK099008 |
| EMBL:AK104427 | ProteinID:BAF15761.1 | ProteinID:BAS90968.1 | ProteinID:CAE05205.3 | InterPro:Coatomer_esu | ProteinID:EAZ31957.1 |
| GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006888 |
| GO:GO:0006890 | GO:GO:0006891 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030126 | GO:GO:0030663 | GO:GO:0031410 | InterPro:IPR011990 | EnsemblPlantsGene:Os04g0612600 | EnsemblPlants:Os04t0612600-02 |
| PFAM:PF04733 | PIRSF:PIRSF016478 | PANTHER:PTHR10805 | PANTHER:PTHR10805:SF1 | UniProt:Q9MAX6 | SUPFAM:SSF48452 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000009D32A | RefSeq:XP_015635608.1 | : | : | : |
Description
COPE1Similar to Coatomer-like protein, epsilon subunit. (Os04t0612600-01);Similar to Coatomer-like protein, epsilon subunit. (Os04t0612600-02)
Coordinates
chr4:-:31064070..31068847
Molecular Weight (calculated)
31582.9 Da
IEP (calculated)
5.145
GRAVY (calculated)
0.031
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPDLLFNL RNLFYLGAYQ AAINNSDVPG LDADAAAERD AIVFRSYVAL GSYQLVISEI DSSAATSLQA VKLLALYLSG DKESAIVSLK EWLSDSAVGS
101: NPVLRLIAGI IFMHEQDYTE ALKHTHSGGT LDLHALNVQI FIKMHRSDYA EKQLKIMQQI DEDHTLTQLA NAWLDIAVGG SKIREAYLIF QDFAEKYPMT
201: GMVLNGKAVC CMHMGSFDEA ETLLLEALNK DAKDPETLAN LIVCNLHLGK PSSRYLSQLK LSHPDHVLVK RAVSAEDNFE RALQAVA
101: NPVLRLIAGI IFMHEQDYTE ALKHTHSGGT LDLHALNVQI FIKMHRSDYA EKQLKIMQQI DEDHTLTQLA NAWLDIAVGG SKIREAYLIF QDFAEKYPMT
201: GMVLNGKAVC CMHMGSFDEA ETLLLEALNK DAKDPETLAN LIVCNLHLGK PSSRYLSQLK LSHPDHVLVK RAVSAEDNFE RALQAVA
001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA
Arabidopsis Description
Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.