Factsheet for GSMUA_Achr2P03150_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 2
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P16810_001	Banana	cytosol	91.03	91.67
VIT_10s0003g05630.t01	Wine grape	extracellular	82.76	83.05
Os04t0612600-02	Rice	cytosol	82.07	82.93
EES12840	Sorghum	cytosol	81.03	81.88
TraesCS2A01G424700.2	Wheat	golgi	80.69	81.53
TraesCS2B01G444400.2	Wheat	extracellular	80.34	81.18
TraesCS2D01G422600.1	Wheat	cytosol	80.0	80.84
PGSC0003DMT400080641	Potato	cytosol	81.03	80.76
Solyc02g030250.2.1	Tomato	cytosol	81.03	80.76
AT1G30630.1	Thale cress	cytosol	79.66	79.11
PGSC0003DMT400054458	Potato	cytosol	78.62	78.35
CDY70767	Canola	cytosol	57.24	77.57
CDY67686	Canola	cytosol	77.93	77.13
CDX84626	Canola	cytosol	77.93	77.13
CDX79587	Canola	cytosol	77.93	77.13
Bra022994.1-P	Field mustard	cytosol	77.93	77.13
Bra021935.1-P	Field mustard	cytosol	77.59	76.79
CDY09554	Canola	cytosol	76.9	76.11
CDY02313	Canola	cytosol	76.9	76.11
Bra032410.1-P	Field mustard	cytosol	76.9	76.11
AT2G34840.1	Thale cress	cytosol	76.21	75.43
KRH11873	Soybean	endoplasmic reticulum	74.83	74.83
Zm00001d026283_P001	Maize	extracellular	80.0	74.12
KRH36897	Soybean	endoplasmic reticulum	73.79	73.79
HORVU2Hr1G099460.4	Barley	cytosol, plastid	73.45	73.2
Zm00001d050474_P001	Maize	cytosol	18.62	72.97
Zm00001d042031_P001	Maize	cytosol	21.38	72.94
Solyc02g069590.2.1	Tomato	nucleus	68.28	70.46
Zm00001d036659_P001	Maize	cytosol	34.83	70.14
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.14	70.0
OQU82434	Sorghum	plastid	70.34	68.92
Os04t0644700-00	Rice	plasma membrane	70.34	68.69
Zm00001d026438_P002	Maize	plastid	68.97	68.03
Zm00001d041399_P001	Maize	cytosol	24.83	44.44
Zm00001d016183_P001	Maize	cytosol	40.34	43.98
Zm00001d000079_P001	Maize	cytosol	19.66	37.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	InterPro:Coatomer_esu	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0031410	EnsemblPlantsGene:GSMUA_Achr2G03150_001	EnsemblPlants:GSMUA_Achr2P03150_001	EnsemblPlants:GSMUA_Achr2T03150_001	InterPro:IPR011990
UniProt:M0S4Q6	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	SUPFAM:SSF48452
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294E7D6	:	:	:	:

Description

Coatomer subunit epsilon-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G03150_001]

Coordinates

chr2:+:8831756..8837082

Molecular Weight (calculated)

31989.2 Da

IEP (calculated)

4.879

GRAVY (calculated)

-0.055

Length

290 amino acids

Sequence
(BLAST)

001: MAAATTPDLL FGLRNSFYLG AYQAAINSSD IPNLPADDAL ERDVLVHRSY IALGSYQLVV SEIDSSAPTA LQAVKLLALY LSGDKESAIS SLQEWLSDAA
101: ISNNPVLRLI AGIIYMHEQD YNEALKHTNS GGTMELHALN VQIFIKMHRS DYAEKQLKIM QQIDEDHTLT QLANAWLDLA VGGSKIQEAY LIFQDFSEKY
201: QMTGMILNGK AVCCMHMGRF DEAESLLLEA LNKDAKDAET LANLAVCSLH LGKPSSRYLN QLKLSHPDHV LVARMASAED NFDRALQSIA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.