Factsheet for Zm00001d026438_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050474_P001	Maize	cytosol	24.83	98.65
Zm00001d036659_P001	Maize	cytosol	46.94	95.83
OQU82434	Sorghum	plastid	93.54	92.91
Os04t0644700-00	Rice	plasma membrane	82.65	81.82
PGSC0003DMT400080641	Potato	cytosol	68.71	69.42
GSMUA_Achr2P03150_001	Banana	cytosol	68.03	68.97
Solyc02g030250.2.1	Tomato	cytosol	68.03	68.73
VIT_10s0003g05630.t01	Wine grape	extracellular	67.35	68.51
GSMUA_Achr7P16810_001	Banana	cytosol	67.01	68.4
PGSC0003DMT400054458	Potato	cytosol	67.69	68.38
AT1G30630.1	Thale cress	cytosol	67.35	67.81
CDY09554	Canola	cytosol	66.67	66.89
CDY02313	Canola	cytosol	66.67	66.89
Bra032410.1-P	Field mustard	cytosol	66.67	66.89
CDX79587	Canola	cytosol	66.33	66.55
CDY67686	Canola	cytosol	65.99	66.21
Bra021935.1-P	Field mustard	cytosol	65.99	66.21
CDY70767	Canola	cytosol	47.96	65.89
CDX84626	Canola	cytosol	65.65	65.87
Bra022994.1-P	Field mustard	cytosol	65.31	65.53
AT2G34840.1	Thale cress	cytosol	64.97	65.19
KRH11873	Soybean	endoplasmic reticulum	61.56	62.41
KRH36897	Soybean	endoplasmic reticulum	60.54	61.38
Solyc02g069590.2.1	Tomato	nucleus	57.48	60.14
Zm00001d026283_P001	Maize	extracellular	63.95	60.06
Zm00001d042031_P001	Maize	cytosol	16.67	57.65
Zm00001d016183_P001	Maize	cytosol	51.36	56.77
Zm00001d041399_P001	Maize	cytosol	19.73	35.8
Zm00001d000079_P001	Maize	cytosol	14.63	28.29

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100194321	MapMan:22.3.1.3	ProteinID:AQK46594.1	ProteinID:AQK46596.1	UniProt:B4FI99
EMBL:BT036837	InterPro:Coatomer_esu	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0031410	InterPro:IPR011990	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B7128	EnsemblPlantsGene:Zm00001d026438	EnsemblPlants:Zm00001d026438_P002	EnsemblPlants:Zm00001d026438_T002

Description

Coatomer subunit epsilon-2

Coordinates

chr10:+:145874106..145877597

Molecular Weight (calculated)

32108.5 Da

IEP (calculated)

5.984

GRAVY (calculated)

-0.082

Length

294 amino acids

Sequence
(BLAST)

001: MAASPDHLFG LRNSFYVGAY HAVITSSQSL PAHALSPDDL VERDALMYRS YIAIGSYQLV IGEIGPSAAT PLQAVKLLAV YLSGDGGNRE SVVSRLRELL
101: SDAAVGSNPI LRVMAGTVFM HERDYAEALK HTNSGGSMEL LALNVQIYLQ MNRTDHAEKQ LRVMQQLDED HTLTQLANAW VDLVLGGSKI QEARLIFQDL
201: SEKYPTTCTI LNGKALCSMH MGNFEDAEGL LLESLNKDAK DTETLANLTV CSLNLGKPAT RYLNQLKLAH PDHALVKRMS SAAESFDRAC QAMA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.