Factsheet for Zm00001d050474_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036659_P001	Maize	cytosol	97.3	50.0
Zm00001d016183_P001	Maize	cytosol	93.24	25.94
Zm00001d026438_P002	Maize	plastid	98.65	24.83
OQU82434	Sorghum	plastid	94.59	23.65
CDY70767	Canola	cytosol	66.22	22.9
Os04t0644700-00	Rice	plasma membrane	89.19	22.22
Solyc02g069590.2.1	Tomato	nucleus	75.68	19.93
PGSC0003DMT400054458	Potato	cytosol	74.32	18.9
GSMUA_Achr2P03150_001	Banana	cytosol	72.97	18.62
PGSC0003DMT400080641	Potato	cytosol	71.62	18.21
VIT_10s0003g05630.t01	Wine grape	extracellular	70.27	17.99
Solyc02g030250.2.1	Tomato	cytosol	70.27	17.87
AT1G30630.1	Thale cress	cytosol	70.27	17.81
GSMUA_Achr7P16810_001	Banana	cytosol	68.92	17.71
KRH11873	Soybean	endoplasmic reticulum	67.57	17.24
CDY09554	Canola	cytosol	67.57	17.06
CDY02313	Canola	cytosol	67.57	17.06
CDX84626	Canola	cytosol	67.57	17.06
CDX79587	Canola	cytosol	67.57	17.06
Bra032410.1-P	Field mustard	cytosol	67.57	17.06
Bra022994.1-P	Field mustard	cytosol	67.57	17.06
Bra021935.1-P	Field mustard	cytosol	67.57	17.06
KRH36897	Soybean	endoplasmic reticulum	66.22	16.9
AT2G34840.1	Thale cress	cytosol	66.22	16.72
CDY67686	Canola	cytosol	66.22	16.72
Zm00001d026283_P001	Maize	extracellular	67.57	15.97
Zm00001d000079_P001	Maize	cytosol	0.0	0.0
Zm00001d041399_P001	Maize	cytosol	0.0	0.0
Zm00001d042031_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d050474_P001	EnsemblPlants:Zm00001d050474_T001	EnsemblPlantsGene:Zm00001d050474	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	InterPro:Coatomer_esu
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	PFAM:PF04733	ProteinID:AQK52572.1
UniParc:UPI0008DB34C8	UniProt:A0A1D6Q1T1	MapMan:35.1	:	:	:

Description

Coatomer subunit epsilon-2

Coordinates

chr4:+:91276235..91277312

Molecular Weight (calculated)

8138.8 Da

IEP (calculated)

5.632

GRAVY (calculated)

-0.254

Length

74 amino acids

Sequence
(BLAST)

1: MHMGNFEDAE GLLLESLNKD AKDTETLANL TVCSLNLGKP ATRYLNQLKL AHPDLVKRMS SAAESFDRAC QAMV

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.