CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 2
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032410.1-P	Field mustard	cytosol	100.0	100.0
CDY02313	Canola	cytosol	99.66	99.66
AT1G30630.1	Thale cress	cytosol	92.15	92.47
CDX79587	Canola	cytosol	88.05	88.05
CDX84626	Canola	cytosol	87.37	87.37
CDY67686	Canola	cytosol	86.35	86.35
CDY70767	Canola	cytosol	60.75	83.18
VIT_10s0003g05630.t01	Wine grape	extracellular	79.18	80.28
PGSC0003DMT400054458	Potato	cytosol	78.5	79.04
PGSC0003DMT400080641	Potato	cytosol	77.13	77.66
Os04t0612600-02	Rice	cytosol	75.77	77.35
Solyc02g030250.2.1	Tomato	cytosol	76.45	76.98
GSMUA_Achr2P03150_001	Banana	cytosol	76.11	76.9
EES12840	Sorghum	cytosol	74.4	75.96
KRH11873	Soybean	endoplasmic reticulum	75.09	75.86
GSMUA_Achr7P16810_001	Banana	cytosol	74.06	75.35
KRH36897	Soybean	endoplasmic reticulum	74.4	75.17
TraesCS2A01G424700.2	Wheat	golgi	73.38	74.91
TraesCS2D01G422600.1	Wheat	cytosol	73.38	74.91
TraesCS2B01G444400.2	Wheat	extracellular	73.04	74.56
Solyc02g069590.2.1	Tomato	nucleus	69.28	72.24
Zm00001d026283_P001	Maize	extracellular	73.72	69.01
Zm00001d050474_P001	Maize	cytosol	17.06	67.57
Zm00001d036659_P001	Maize	cytosol	33.11	67.36
Zm00001d026438_P002	Maize	plastid	66.89	66.67
Os04t0644700-00	Rice	plasma membrane	66.55	65.66
HORVU2Hr1G099460.4	Barley	cytosol, plastid	65.19	65.64
OQU82434	Sorghum	plastid	66.21	65.54
Zm00001d042031_P001	Maize	cytosol	18.77	64.71
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.48	60.0
Zm00001d016183_P001	Maize	cytosol	38.23	42.11
Zm00001d041399_P001	Maize	cytosol	20.48	37.04
Zm00001d000079_P001	Maize	cytosol	16.04	30.92

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	GO:A0A078F988	UniProt:A0A078F988	EnsemblPlants:CDY09554	ProteinID:CDY09554
ProteinID:CDY09554.1	InterPro:Coatomer_esu	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0031410	EnsemblPlantsGene:GSBRNA2T00031161001	InterPro:IPR011990	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805
PANTHER:PTHR10805:SF1	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00025424EB	SEG:seg	:

Description

BnaC05g23650DCoatomer subunit epsilon [Source:UniProtKB/TrEMBL;Acc:A0A078F988]

Coordinates

chrLK031997:+:460943..462742

Molecular Weight (calculated)

32618.8 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.159

Length

293 amino acids

Sequence
(BLAST)

001: MASMAAGPDH LFNLRNSFYL GAYQAAINNS EIPNLSQEDI VERDCLVHRS YIALGSYQLV INEIDEASAT PLQAVKLLAM YLSSPENKES TIASLREWLA
101: DPTAGSNATV RLIAGTIFMH EEDYSEALKH THSGGTMDLH ALNVQIFIKM HRSDYAEKQL RVMQQFDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFQDFS
201: EKYPMTSLIL NSKAVCCMHM GNFEEAETLL LDALNKDAKD PETLANLVVC SIHVGKPSPR YLSQLKLSHP EHVLVKRAAS AEDNFERALQ SFA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.