Factsheet for Zm00001d026283_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12840	Sorghum	cytosol	90.1	98.26
TraesCS2B01G444400.2	Wheat	extracellular	85.62	93.38
TraesCS2A01G424700.2	Wheat	golgi	85.62	93.38
TraesCS2D01G422600.1	Wheat	cytosol	85.3	93.03
Zm00001d042031_P001	Maize	cytosol	23.32	85.88
HORVU2Hr1G099460.4	Barley	cytosol, plastid	77.96	83.85
GSMUA_Achr2P03150_001	Banana	cytosol	74.12	80.0
VIT_10s0003g05630.t01	Wine grape	extracellular	72.84	78.89
Solyc02g030250.2.1	Tomato	cytosol	70.93	76.29
PGSC0003DMT400080641	Potato	cytosol	70.93	76.29
GSMUA_Achr7P16810_001	Banana	cytosol	69.65	75.69
AT1G30630.1	Thale cress	cytosol	70.61	75.68
CDY67686	Canola	cytosol	70.61	75.43
Bra021935.1-P	Field mustard	cytosol	70.61	75.43
CDX79587	Canola	cytosol	70.61	75.43
PGSC0003DMT400054458	Potato	cytosol	69.65	74.91
CDY70767	Canola	cytosol	51.12	74.77
CDX84626	Canola	cytosol	69.97	74.74
Bra022994.1-P	Field mustard	cytosol	69.65	74.4
AT2G34840.1	Thale cress	cytosol	69.33	74.06
CDY02313	Canola	cytosol	69.01	73.72
Bra032410.1-P	Field mustard	cytosol	69.01	73.72
CDY09554	Canola	cytosol	69.01	73.72
KRH11873	Soybean	endoplasmic reticulum	64.86	70.0
KRH36897	Soybean	endoplasmic reticulum	64.22	69.31
Zm00001d050474_P001	Maize	cytosol	15.97	67.57
Solyc02g069590.2.1	Tomato	nucleus	58.47	65.12
Zm00001d026438_P002	Maize	plastid	60.06	63.95
Zm00001d036659_P001	Maize	cytosol	29.07	63.19
Zm00001d041399_P001	Maize	cytosol	26.2	50.62
Zm00001d016183_P001	Maize	cytosol	34.19	40.23
Zm00001d000079_P001	Maize	cytosol	19.17	39.47

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	EntrezGene:541811	UniProt:A0A1D6JE22	ProteinID:AQK46060.1	InterPro:Coatomer_esu
GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006890
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0031410	InterPro:IPR011990
PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000842336C	EnsemblPlantsGene:Zm00001d026283	EnsemblPlants:Zm00001d026283_P001	EnsemblPlants:Zm00001d026283_T001	SEG:seg	:

Description

coatomer protein2

Coordinates

chr10:-:142760846..142765876

Molecular Weight (calculated)

34031.8 Da

IEP (calculated)

5.004

GRAVY (calculated)

0.127

Length

313 amino acids

Sequence
(BLAST)

001: MASPDLLFNL RNLFYLGAYQ AAINNSDVPG LDADAAAERD AIVFRSYIAL GSYQLVISEI DSSAATSLQA VKLLALYLTG DKVSALDLNY VASDLALIAL
101: CWSGSGSLEG AISSLKEWLS DSAIGSNPVL RLIAGIVFMH EQDYNEALKH THSGGTLDLH ALNVQIFIKM HRSDYAEKQL KIMQQIDEDH TLTQLANAWL
201: GIAVGGSKIR EAYLIFQDFA EKYPMTGMVL NGKAVCCMHM GSFEEAETLL LEALNKDAKD PETLANLIVC NLHLGKPSSR YLSQLKLSHP DHVLVKNAAA
301: SEATFERALQ AVA

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.