CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79587	Canola	cytosol	98.98	98.98
Bra022994.1-P	Field mustard	cytosol	98.63	98.63
CDY67686	Canola	cytosol	92.49	92.49
AT2G34840.1	Thale cress	cytosol	90.1	90.1
CDY70767	Canola	cytosol	65.53	89.72
CDY09554	Canola	cytosol	87.37	87.37
CDY02313	Canola	cytosol	87.03	87.03
VIT_10s0003g05630.t01	Wine grape	extracellular	81.23	82.35
Solyc02g030250.2.1	Tomato	cytosol	78.16	78.69
PGSC0003DMT400080641	Potato	cytosol	78.16	78.69
PGSC0003DMT400054458	Potato	cytosol	77.82	78.35
GSMUA_Achr2P03150_001	Banana	cytosol	77.13	77.93
Os04t0612600-02	Rice	cytosol	76.11	77.7
KRH11873	Soybean	endoplasmic reticulum	76.11	76.9
TraesCS2A01G424700.2	Wheat	golgi	75.09	76.66
EES12840	Sorghum	cytosol	74.74	76.31
TraesCS2B01G444400.2	Wheat	extracellular	74.74	76.31
KRH36897	Soybean	endoplasmic reticulum	75.43	76.21
TraesCS2D01G422600.1	Wheat	cytosol	74.4	75.96
GSMUA_Achr7P16810_001	Banana	cytosol	74.06	75.35
Solyc02g069590.2.1	Tomato	nucleus	67.58	70.46
Zm00001d026283_P001	Maize	extracellular	74.74	69.97
Zm00001d042031_P001	Maize	cytosol	19.8	68.24
Zm00001d050474_P001	Maize	cytosol	17.06	67.57
HORVU2Hr1G099460.4	Barley	cytosol, plastid	66.89	67.35
Zm00001d036659_P001	Maize	cytosol	32.76	66.67
Os04t0644700-00	Rice	plasma membrane	67.24	66.33
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.53	66.0
OQU82434	Sorghum	plastid	66.55	65.88
Zm00001d026438_P002	Maize	plastid	65.87	65.65
Zm00001d016183_P001	Maize	cytosol	37.88	41.73
Zm00001d041399_P001	Maize	cytosol	22.87	41.36
Zm00001d000079_P001	Maize	cytosol	16.72	32.24

Protein Annotations

EnsemblPlants:CDX84626	EnsemblPlantsGene:GSBRNA2T00141895001	Gene3D:1.25.40.10	GO:A0A078D5M6	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	InterPro:Coatomer_esu
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	PFAM:PF04733	PIRSF:PIRSF016478
ProteinID:CDX84626	ProteinID:CDX84626.1	SUPFAM:SSF48452	UniParc:UPI0004EE23D8	MapMan:22.3.1.3	:

Description

BnaA03g16040D

Coordinates

chrLK031838:-:457690..459733

Molecular Weight (calculated)

32656.9 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.133

Length

293 amino acids

Sequence
(BLAST)

001: MAAMGSGQDH LFNLRNTFYL GAYQTAINNS EIPNLSPEDA VERDCLVFRS YIALGSYQLV ISEIDEAAAT PLQAVKLLAM YLSSPDNKES TISSLKEWLA
101: DSTIGNNAIL RLIAGTVFMH EEDYNEALKH THAGGTMDLH ALNVQIFIKM HRSDYAEKQL RVMQQYDEDH TLTQLATAWL NLAVGGSKIQ EAYLIFQDFS
201: ERYPMTCLVL NSKAVCCMQM GNFDEAESLL LEALNKDAKD PETLANLVVC SLHVGKSSSR YLSQLKLSHP EHVLVKRVSS AEDNFERALQ SIA

Best Arabidopsis Sequence Match ( AT2G34840.1 )
(BLAST)

001: MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA
101: DSTIGNNDTL RLIAGIIFMH EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFEDFS
201: EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA

Arabidopsis Description

Coatomer subunit epsilon-2 [Source:UniProtKB/Swiss-Prot;Acc:O64748]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.