CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67686	Canola	cytosol	95.33	69.62
Zm00001d036659_P001	Maize	cytosol	44.86	66.67
Zm00001d050474_P001	Maize	cytosol	22.9	66.22
CDX79587	Canola	cytosol	89.72	65.53
CDX84626	Canola	cytosol	89.72	65.53
AT2G34840.1	Thale cress	cytosol	86.92	63.48
CDY02313	Canola	cytosol	83.18	60.75
CDY09554	Canola	cytosol	83.18	60.75
VIT_10s0003g05630.t01	Wine grape	extracellular	80.37	59.52
GSMUA_Achr2P03150_001	Banana	cytosol	77.57	57.24
Os04t0612600-02	Rice	cytosol	76.64	57.14
PGSC0003DMT400080641	Potato	cytosol	76.17	56.01
Solyc02g030250.2.1	Tomato	cytosol	76.17	56.01
EES12840	Sorghum	cytosol	74.77	55.75
TraesCS2A01G424700.2	Wheat	golgi	74.77	55.75
PGSC0003DMT400054458	Potato	cytosol	75.7	55.67
KRH11873	Soybean	endoplasmic reticulum	75.23	55.52
TraesCS2B01G444400.2	Wheat	extracellular	74.3	55.4
KRH36897	Soybean	endoplasmic reticulum	74.77	55.17
TraesCS2D01G422600.1	Wheat	cytosol	73.83	55.05
GSMUA_Achr7P16810_001	Banana	cytosol	71.96	53.47
Zm00001d026283_P001	Maize	extracellular	74.77	51.12
Os04t0644700-00	Rice	plasma membrane	68.69	49.49
Solyc02g069590.2.1	Tomato	nucleus	63.55	48.4
OQU82434	Sorghum	plastid	66.36	47.97
Zm00001d026438_P002	Maize	plastid	65.89	47.96
HORVU2Hr1G099460.4	Barley	cytosol, plastid	64.02	47.08
Zm00001d042031_P001	Maize	cytosol	17.29	43.53
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.63	42.0
Zm00001d016183_P001	Maize	cytosol	47.66	38.35
Zm00001d041399_P001	Maize	cytosol	18.69	24.69
Zm00001d000079_P001	Maize	cytosol	10.75	15.13

Protein Annotations

EnsemblPlants:CDY70767	EnsemblPlantsGene:GSBRNA2T00007328001	Gene3D:1.25.40.10	GO:A0A078JYQ8	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	InterPro:Coatomer_esu
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	PFAM:PF04733	ProteinID:CDY70767
ProteinID:CDY70767.1	SUPFAM:SSF48452	UniParc:UPI0004EDFD91	UniProt:A0A078JYQ8	MapMan:22.3.1.3	:

Description

BnaUnng04020DBnaUnng04020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYQ8]

Coordinates

chrLK043248:-:1690..2882

Molecular Weight (calculated)

23897.5 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.133

Length

214 amino acids

Sequence
(BLAST)

001: MFDVCGFDQE STISSLREWL ADSTIGNNAT LRLVAGIVFM HEEDYSEALK HTHAGGTMDL HALNVQIFIK MHRSDYAEKQ LGVMQQYDED HTLTQLATAW
101: FNLAVGGSKI QEAYLIFQDF CEKYPMTCLI LNGKAVCCMQ MGNFDEAESL LLEALNKDAK DPETLANLVV CSLHVGKSSS RYLSQLKLSH PEHVLAKRVS
201: SAEDNFERAV QSVA

Best Arabidopsis Sequence Match ( AT2G34840.2 )
(BLAST)

001: MYLSTPQNKE STISSLKEWL ADSTIGNNDT LRLIAGIIFM HEEDYNETLK HTHAGGTMDL YALNVQIFIK MHRAEYAEKQ LRVMQQIDED HTLTQLASAW
101: LNLAVGGSKI QEAYLIFEDF SEKYPMTCLI LNGKAVCCMQ MGNFDEAETL LLEALNKDAK DPETLANLVV CSLHVGKSSS RHLSQLKLSH PEHILVKRVS
201: SAEDNFERAV QLVA

Arabidopsis Description

Coatomer subunit epsilon-2 [Source:UniProtKB/Swiss-Prot;Acc:O64748]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.