Factsheet for Solyc02g069590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plasma membrane 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054458	Potato	cytosol	83.99	81.1
Zm00001d050474_P001	Maize	cytosol	19.93	75.68
Solyc02g030250.2.1	Tomato	cytosol	78.29	75.6
VIT_10s0003g05630.t01	Wine grape	extracellular	72.95	70.93
AT1G30630.1	Thale cress	cytosol	72.95	70.21
Zm00001d036659_P001	Maize	cytosol	35.94	70.14
Bra032410.1-P	Field mustard	cytosol	72.24	69.28
CDY09554	Canola	cytosol	72.24	69.28
CDY02313	Canola	cytosol	71.89	68.94
GSMUA_Achr2P03150_001	Banana	cytosol	70.46	68.28
GSMUA_Achr7P16810_001	Banana	cytosol	69.75	68.06
AT2G34840.1	Thale cress	cytosol	70.82	67.92
Bra021935.1-P	Field mustard	cytosol	70.82	67.92
Bra022994.1-P	Field mustard	cytosol	70.82	67.92
CDY67686	Canola	cytosol	70.82	67.92
CDX79587	Canola	cytosol	70.46	67.58
CDX84626	Canola	cytosol	70.46	67.58
KRH11873	Soybean	endoplasmic reticulum	69.39	67.24
KRH36897	Soybean	endoplasmic reticulum	68.68	66.55
Os04t0612600-02	Rice	cytosol	66.19	64.81
EES12840	Sorghum	cytosol	65.48	64.11
CDY70767	Canola	cytosol	48.4	63.55
TraesCS2A01G424700.2	Wheat	golgi	64.06	62.72
TraesCS2B01G444400.2	Wheat	extracellular	64.06	62.72
TraesCS2D01G422600.1	Wheat	cytosol	64.06	62.72
Zm00001d026283_P001	Maize	extracellular	65.12	58.47
OQU82434	Sorghum	plastid	60.85	57.77
Zm00001d026438_P002	Maize	plastid	60.14	57.48
HORVU2Hr1G099460.4	Barley	cytosol, plastid	58.01	56.01
Os04t0644700-00	Rice	plasma membrane	58.36	55.22
Zm00001d016183_P001	Maize	cytosol	40.57	42.86
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.03	31.0
Zm00001d042031_P001	Maize	cytosol	8.19	27.06
Zm00001d041399_P001	Maize	cytosol	11.39	19.75
Zm00001d000079_P001	Maize	cytosol	10.32	19.08

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	InterPro:Coatomer_esu	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030126	GO:GO:0031410	InterPro:IPR011990
UniProt:K4B7U1	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	SUPFAM:SSF48452
EnsemblPlantsGene:Solyc02g069590.2	EnsemblPlants:Solyc02g069590.2.1	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002768292	SEG:seg	:

Description

Coatomer subunit epsilon [Source:UniProtKB/TrEMBL;Acc:K4B7U1]

Coordinates

chr2:-:39438584..39441589

Molecular Weight (calculated)

31460.8 Da

IEP (calculated)

7.126

GRAVY (calculated)

-0.148

Length

281 amino acids

Sequence
(BLAST)

001: MAVSGPDPLF GLRNNFYIGA YQAAINNSDV PNLSQEDAVE RDTLVYRSYI ALSSYQLVIN EIDASAPTPL QAVKLLALYL ASPNNKVSPS DWWILLKINS
101: QLQRVSSKVS ILKKKKGFPS FWGGWVWHAL NVQILIKMHR SDYAEKQLRI MQQVDEDHTL TQLASAWLNL AVGGSKIQEA YLIYQDFSEK YQMTSLILNG
201: KAVCCMHMGN FDEAETLLLE ALNKDAKDPE TLANLVVCSL HLGKPSTRYL NQLKLSNPEH TLVKRAASAE ESFDRAVQTV A

Best Arabidopsis Sequence Match ( AT1G30630.1 )
(BLAST)

001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

Arabidopsis Description

Coatomer subunit epsilon-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.