Factsheet for Bra021935.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67686	Canola	cytosol	98.63	98.63
Bra022994.1-P	Field mustard	cytosol	91.47	91.47
AT2G34840.1	Thale cress	cytosol	89.42	89.42
Bra032410.1-P	Field mustard	cytosol	85.67	85.67
VIT_10s0003g05630.t01	Wine grape	extracellular	81.57	82.7
Os04t0612600-02	Rice	cytosol	77.13	78.75
PGSC0003DMT400080641	Potato	cytosol	77.82	78.35
Solyc02g030250.2.1	Tomato	cytosol	77.82	78.35
PGSC0003DMT400054458	Potato	cytosol	77.13	77.66
GSMUA_Achr2P03150_001	Banana	cytosol	76.79	77.59
TraesCS2A01G424700.2	Wheat	golgi	75.77	77.35
EES12840	Sorghum	cytosol	75.43	77.0
TraesCS2B01G444400.2	Wheat	extracellular	75.43	77.0
TraesCS2D01G422600.1	Wheat	cytosol	75.09	76.66
KRH11873	Soybean	endoplasmic reticulum	75.09	75.86
KRH36897	Soybean	endoplasmic reticulum	74.4	75.17
GSMUA_Achr7P16810_001	Banana	cytosol	73.38	74.65
Solyc02g069590.2.1	Tomato	nucleus	67.92	70.82
Zm00001d026283_P001	Maize	extracellular	75.43	70.61
HORVU2Hr1G099460.4	Barley	cytosol, plastid	67.58	68.04
Zm00001d050474_P001	Maize	cytosol	17.06	67.57
Zm00001d036659_P001	Maize	cytosol	33.11	67.36
Zm00001d042031_P001	Maize	cytosol	19.45	67.06
Os04t0644700-00	Rice	plasma membrane	67.24	66.33
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.53	66.0
Zm00001d026438_P002	Maize	plastid	66.21	65.99
OQU82434	Sorghum	plastid	66.55	65.88
Zm00001d016183_P001	Maize	cytosol	38.91	42.86
Zm00001d041399_P001	Maize	cytosol	22.18	40.12
Zm00001d000079_P001	Maize	cytosol	17.06	32.89

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	EnsemblPlantsGene:Bra021935	EnsemblPlants:Bra021935.1	EnsemblPlants:Bra021935.1-P	InterPro:Coatomer_esu
GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006890
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0031410	InterPro:IPR011990
UniProt:M4DZI8	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1	SUPFAM:SSF48452
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002543A9F	:	:	:	:

Description

AT2G34840 (E=3e-150) | coatomer protein epsilon subunit family protein / COPE family protein

Coordinates

chrA04:+:15274252..15276050

Molecular Weight (calculated)

32506.7 Da

IEP (calculated)

5.150

GRAVY (calculated)

-0.093

Length

293 amino acids

Sequence
(BLAST)

001: MASTGAAPDH LFNLRNQFYL GAYQTAINNS DIPHLSPEDA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSSPAHKES TISSLREWLA
101: DSTIGNNATL RLVAGIVFMH EEDYSEALKH THAGGTMDLH ALNVQIFIKM HRSDYAEKQL GVMQQYDEDH TLTQLATAWF NLAVGGSKIQ EAYLIFQDFC
201: EKYPMTCLIL NGKAVCCMQM GNFDEAESLL LEALNKDAKD PETLANLVVC SLHVGKSSSR YLSQLKLSHP EHVLVKRVSS AEDNFERAVQ SVA

Best Arabidopsis Sequence Match ( AT2G34840.1 )
(BLAST)

001: MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA
101: DSTIGNNDTL RLIAGIIFMH EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFEDFS
201: EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA

Arabidopsis Description

Coatomer subunit epsilon-2 [Source:UniProtKB/Swiss-Prot;Acc:O64748]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.