CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021935.1-P	Field mustard	cytosol	98.63	98.63
CDY70767	Canola	cytosol	69.62	95.33
CDX79587	Canola	cytosol	92.83	92.83
CDX84626	Canola	cytosol	92.49	92.49
AT2G34840.1	Thale cress	cytosol	90.1	90.1
CDY09554	Canola	cytosol	86.35	86.35
CDY02313	Canola	cytosol	86.01	86.01
VIT_10s0003g05630.t01	Wine grape	extracellular	80.89	82.01
Os04t0612600-02	Rice	cytosol	76.79	78.4
PGSC0003DMT400080641	Potato	cytosol	77.82	78.35
Solyc02g030250.2.1	Tomato	cytosol	77.82	78.35
GSMUA_Achr2P03150_001	Banana	cytosol	77.13	77.93
PGSC0003DMT400054458	Potato	cytosol	77.13	77.66
TraesCS2A01G424700.2	Wheat	golgi	75.43	77.0
EES12840	Sorghum	cytosol	75.43	77.0
TraesCS2B01G444400.2	Wheat	extracellular	75.09	76.66
TraesCS2D01G422600.1	Wheat	cytosol	74.74	76.31
KRH11873	Soybean	endoplasmic reticulum	74.4	75.17
GSMUA_Achr7P16810_001	Banana	cytosol	73.72	75.0
KRH36897	Soybean	endoplasmic reticulum	73.72	74.48
Solyc02g069590.2.1	Tomato	nucleus	67.92	70.82
Zm00001d026283_P001	Maize	extracellular	75.43	70.61
HORVU2Hr1G099460.4	Barley	cytosol, plastid	67.24	67.7
Zm00001d042031_P001	Maize	cytosol	19.45	67.06
Zm00001d036659_P001	Maize	cytosol	32.76	66.67
Os04t0644700-00	Rice	plasma membrane	67.24	66.33
Zm00001d050474_P001	Maize	cytosol	16.72	66.22
HORVU2Hr1G099380.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.53	66.0
Zm00001d026438_P002	Maize	plastid	66.21	65.99
OQU82434	Sorghum	plastid	66.55	65.88
Zm00001d016183_P001	Maize	cytosol	38.23	42.11
Zm00001d041399_P001	Maize	cytosol	22.18	40.12
Zm00001d000079_P001	Maize	cytosol	17.06	32.89

Protein Annotations

Gene3D:1.25.40.10	MapMan:22.3.1.3	GO:A0A078JPP3	UniProt:A0A078JPP3	EnsemblPlants:CDY67686	ProteinID:CDY67686
ProteinID:CDY67686.1	InterPro:Coatomer_esu	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0031410	EnsemblPlantsGene:GSBRNA2T00065996001	InterPro:IPR011990	PFAM:PF04733	PIRSF:PIRSF016478	PANTHER:PTHR10805
PANTHER:PTHR10805:SF1	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE2BEB	:	:

Description

BnaAnng24960DCoatomer subunit epsilon [Source:UniProtKB/TrEMBL;Acc:A0A078JPP3]

Coordinates

chrLK036394:+:5758..7799

Molecular Weight (calculated)

32518.8 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.067

Length

293 amino acids

Sequence
(BLAST)

001: MAAMGAAPDH LFNLRNQFYL GAYQTAINNS EIPHLSPEDA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSSPAHKES TISSLREWLA
101: DSTIGNNATL RLVAGIVFMH EEDYSEALKH THAGGTMDLH ALNVQIFIKM HRSDYAEKQL GVMQQYDEDH TLTQLATAWF NLAVGGSKIQ EAYLIFQDFC
201: EKYPMTCLIL NGKAVCCMQM GNFDEAESLL LEALNKDAKD PETLANLVVC SLHVGKSSSR YLSQLKLSHP EHVLVKRVAS AEDNFERAVQ SVA

Best Arabidopsis Sequence Match ( AT2G34840.1 )
(BLAST)

001: MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA
101: DSTIGNNDTL RLIAGIIFMH EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFEDFS
201: EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA

Arabidopsis Description

Coatomer subunit epsilon-2 [Source:UniProtKB/Swiss-Prot;Acc:O64748]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.