CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002973.1-P	Field mustard	plastid	93.97	93.97
CDY42463	Canola	plastid	93.97	93.97
CDY43032	Canola	cytosol	60.3	93.75
CDY18341	Canola	plastid	90.95	92.35
CDY28762	Canola	plastid	92.46	91.54
AT5G54600.1	Thale cress	plastid	88.94	89.39
Solyc07g063960.2.1	Tomato	nucleus	66.33	69.84
PGSC0003DMT400049598	Potato	plastid	64.32	67.72
GSMUA_Achr8P33170_001	Banana	plastid	62.81	65.79
KRH27125	Soybean	plastid	63.82	65.46
KRH22214	Soybean	nucleus, plastid	63.32	64.95
VIT_19s0014g04970.t01	Wine grape	plastid	61.81	64.4
EER90241	Sorghum	plastid	56.28	58.95
Os06t0683200-01	Rice	plastid	55.28	57.89
HORVU2Hr1G022000.2	Barley	cytosol	41.71	56.46
CDY43816	Canola	nucleus	47.74	55.23
Zm00001d014488_P001	Maize	plastid	57.29	55.07
HORVU7Hr1G101810.4	Barley	plastid	47.24	54.65
TraesCS7A01G450600.1	Wheat	golgi, plastid	51.76	53.93
TraesCS7B01G350400.1	Wheat	plastid	51.76	53.93
TraesCS7D01G439900.1	Wheat	plastid	51.76	53.93
PGSC0003DMT400064380	Potato	plastid	60.8	46.36
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	25.13	39.06
CDY16856	Canola	cytosol	20.1	25.16
CDX88034	Canola	cytosol	20.1	25.16
CDX87168	Canola	cytosol	20.1	25.16
CDX80371	Canola	cytosol	20.1	25.16

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:A0A078EZR8	EnsemblPlants:CDY06636	ProteinID:CDY06636	ProteinID:CDY06636.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00122796001	InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_B
PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0004EE82BA	SEG:seg	:	:	:	:

Description

BnaC02g13600D

Coordinates

chrLK031971:-:1017868..1019732

Molecular Weight (calculated)

22060.0 Da

IEP (calculated)

10.598

GRAVY (calculated)

-0.375

Length

199 amino acids

Sequence
(BLAST)

001: MATMMTSLQS SFTSLSISSN SSFLGQRLLS PISLSAASPV KPTGNPCLVF AKLKRWERKK CKPNSLPILH KMHVKFGDTV KVISGRDKGK IGEVTKIFTH
101: NSTIVIKDVN LKTKHMKSRE EGEPGQILKI EAPIHSSNVM LYSKEKEVVS RVGHKVLEDG QKVRYLIKTG ELIDTIEKWK QLKEAKDKET SQVAAASAS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.