Factsheet for PGSC0003DMT400049598

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063960.2.1	Tomato	nucleus	94.18	94.18
VIT_19s0014g04970.t01	Wine grape	plastid	72.49	71.73
GSMUA_Achr8P33170_001	Banana	plastid	69.31	68.95
KRH27125	Soybean	plastid	69.84	68.04
KRH22214	Soybean	nucleus, plastid	69.84	68.04
Bra029017.1-P	Field mustard	cytosol	45.5	67.19
CDY43032	Canola	cytosol	45.5	67.19
AT5G54600.1	Thale cress	plastid	69.84	66.67
CDY18341	Canola	plastid	67.72	65.31
Bra002973.1-P	Field mustard	plastid	68.25	64.82
CDY42463	Canola	plastid	68.25	64.82
CDY06636	Canola	plastid	67.72	64.32
CDY28762	Canola	plastid	67.2	63.18
Bra022734.1-P	Field mustard	plastid	67.2	63.18
PGSC0003DMT400064380	Potato	plastid	83.07	60.15
EER90241	Sorghum	plastid	57.67	57.37
Os06t0683200-01	Rice	plastid	57.14	56.84
HORVU2Hr1G022000.2	Barley	cytosol	42.33	54.42
TraesCS7D01G439900.1	Wheat	plastid	54.5	53.93
TraesCS7B01G350400.1	Wheat	plastid	54.5	53.93
TraesCS7A01G450600.1	Wheat	golgi, plastid	54.5	53.93
HORVU7Hr1G101810.4	Barley	plastid	48.68	53.49
Zm00001d014488_P001	Maize	plastid	57.67	52.66
CDY43816	Canola	nucleus	38.1	41.86
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	25.4	37.5
PGSC0003DMT400046331	Potato	cytosol	21.16	25.32
PGSC0003DMT400079319	Potato	mitochondrion	20.63	24.53

Protein Annotations

EntrezGene:102605576	MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
InterPro:IPR014722	InterPro:KOW	UniProt:M1BP07	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136
EnsemblPlantsGene:PGSC0003DMG400019266	PGSC:PGSC0003DMG400019266	EnsemblPlants:PGSC0003DMT400049598	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000296687D	RefSeq:XP_006360103.1	SEG:seg	:	:

Description

50S ribosomal protein L24, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400019266]

Coordinates

chr7:+:54125571..54128700

Molecular Weight (calculated)

20910.5 Da

IEP (calculated)

10.623

GRAVY (calculated)

-0.448

Length

189 amino acids

Sequence
(BLAST)

001: MAALQSSFTG LSISSTSFFG QRFSPPLSLP LVKSTEGPCL ITAKLKRWER KECKPNSLPV LHKMHVRLGD TVKVISGHDK GKIGEITEII KHNSKVVVKE
101: VNLKTKHVKS RSEEEPGQIV KIEAPIHSSN VMLYSKEQKV TSRVGHKTLD NGKRVRYLIK TGEIIDSAEN WKKAVKEKGK TTEAVAAAS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.