CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42463	Canola	plastid	97.96	96.48
CDY43032	Canola	cytosol	61.22	93.75
AT5G54600.1	Thale cress	plastid	92.86	91.92
CDY06636	Canola	plastid	92.35	90.95
CDY28762	Canola	plastid	87.76	85.57
Solyc07g063960.2.1	Tomato	nucleus	66.84	69.31
PGSC0003DMT400049598	Potato	plastid	65.31	67.72
GSMUA_Achr8P33170_001	Banana	plastid	64.8	66.84
KRH27125	Soybean	plastid	65.82	66.49
KRH22214	Soybean	nucleus, plastid	65.31	65.98
VIT_19s0014g04970.t01	Wine grape	plastid	63.78	65.44
EER90241	Sorghum	plastid	59.18	61.05
Os06t0683200-01	Rice	plastid	58.16	60.0
HORVU2Hr1G022000.2	Barley	cytosol	43.88	58.5
HORVU7Hr1G101810.4	Barley	plastid	50.0	56.98
Zm00001d014488_P001	Maize	plastid	59.18	56.04
TraesCS7A01G450600.1	Wheat	golgi, plastid	54.08	55.5
TraesCS7B01G350400.1	Wheat	plastid	54.08	55.5
TraesCS7D01G439900.1	Wheat	plastid	54.08	55.5
CDY43816	Canola	nucleus	47.96	54.65
PGSC0003DMT400064380	Potato	plastid	64.29	48.28
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	26.53	40.62
CDY16856	Canola	cytosol	20.41	25.16
CDX88034	Canola	cytosol	20.41	25.16
CDX87168	Canola	cytosol	20.41	25.16
CDX80371	Canola	cytosol	20.41	25.16

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:A0A078FZ63	UniProt:A0A078FZ63	EnsemblPlants:CDY18341	ProteinID:CDY18341
ProteinID:CDY18341.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00002931001	InterPro:IPR014722
InterPro:KOW	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903
PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104
TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EDD6F7	SEG:seg	:	:

Description

BnaC09g30910DBnaC09g30910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ63]

Coordinates

chrLK032084:+:609020..610265

Molecular Weight (calculated)

21834.8 Da

IEP (calculated)

10.598

GRAVY (calculated)

-0.343

Length

196 amino acids

Sequence
(BLAST)

001: MATMSALQSS FTSLSISSFL GQRLLSPIPL SVASPVKLAE NRPCLVFAKL KRWERKKCKP NSLPILHKMH VKFGDTVKVI SGRDKGKVGE VTKIFTHNST
101: IVIKDVNLKT KHMKSREEGE PGQIVKIEAP IHSSNVMLYS KEKEVVSRVG HKVLEDGQKV RYLIKTGELI DTVEKWKQLK EAKDKETTQV AAASAS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.