CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022734.1-P	Field mustard	plastid	100.0	100.0
CDY06636	Canola	plastid	91.54	92.46
CDY42463	Canola	plastid	88.06	88.94
CDY43032	Canola	cytosol	56.22	88.28
CDY18341	Canola	plastid	85.57	87.76
AT5G54600.1	Thale cress	plastid	83.58	84.85
Solyc07g063960.2.1	Tomato	nucleus	63.18	67.2
PGSC0003DMT400049598	Potato	plastid	63.18	67.2
GSMUA_Achr8P33170_001	Banana	plastid	61.69	65.26
VIT_19s0014g04970.t01	Wine grape	plastid	60.7	63.87
KRH27125	Soybean	plastid	61.19	63.4
KRH22214	Soybean	nucleus, plastid	61.19	63.4
EER90241	Sorghum	plastid	55.22	58.42
Os06t0683200-01	Rice	plastid	54.23	57.37
CDY43816	Canola	nucleus	48.76	56.98
HORVU2Hr1G022000.2	Barley	cytosol	41.29	56.46
Zm00001d014488_P001	Maize	plastid	56.22	54.59
HORVU7Hr1G101810.4	Barley	plastid	45.77	53.49
TraesCS7A01G450600.1	Wheat	golgi, plastid	50.25	52.88
TraesCS7B01G350400.1	Wheat	plastid	50.25	52.88
TraesCS7D01G439900.1	Wheat	plastid	50.25	52.88
PGSC0003DMT400064380	Potato	plastid	59.2	45.59
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	25.37	39.84
CDY16856	Canola	cytosol	18.91	23.9
CDX88034	Canola	cytosol	18.91	23.9
CDX87168	Canola	cytosol	18.91	23.9
CDX80371	Canola	cytosol	18.91	23.9

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:A0A078GUK1	UniProt:A0A078GUK1	EnsemblPlants:CDY28762	ProteinID:CDY28762
ProteinID:CDY28762.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00041407001	InterPro:IPR014722
InterPro:KOW	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903
PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104
TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000254668A	SEG:seg	:	:

Description

BnaA02g09540DBnaA02g09540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUK1]

Coordinates

chrLK032226:-:82301..83975

Molecular Weight (calculated)

22332.3 Da

IEP (calculated)

10.590

GRAVY (calculated)

-0.432

Length

201 amino acids

Sequence
(BLAST)

001: MATMMTSLQS SFTSLSISSK SNSSFLGQRL LSPLSLSAAS PVKPAQNPCL VYAKLKRWER KKCKPNSLPI LHKMHVKFGD TVKVISGRDK GKIGEVTKIF
101: THNSTIVIKD VNLKTKHMKS REEGEPGQIL KIEAPIHSSN VMLYSKEKEV VSRVGHKVLE DGQKVRYLIK TGELIDTIEK WKQLKEAKDK ETTQVAAGSA
201: S

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.